Dark CO2 fixation in temperate beech and pine forest soils

Type II methanotrophs: A promising microbial cell-factory platform for bioconversion of methane to chemicals

(2021) Diep Thi Ngoc Nguyen et al.   BIOTECHNOLOGY ADVANCES

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Rates of dark CO2 fixation are driven by microbial biomass in a temperate forest soil

(2020) Rachael Akinyede et al.   SOIL BIOLOGY & BIOCHEMISTRY

Author Correction: Linking soil microbial community dynamics to straw-carbon distribution in soil organic carbon

(2020) Yao Su et al.   Scientific Reports

Unexpected metabolic versatility among type II methanotrophs in the Alphaproteobacteria

(2020) Anna Hakobyan et al.   BIOLOGICAL CHEMISTRY

European beech leads to more bioactive humus forms but stronger mineral soil acidification as Norway spruce and Scots pine – Results of a repeated site assessment after 63 and 82 years of forest conversion in Central Germany

(2020) Florian Achilles et al.   FOREST ECOLOGY AND MANAGEMENT

Microbial abundance, activity and population genomic profiling with mOTUs2

(2019) Alessio Milanese et al.   Nature Communications

Quantitative assessment of microbial necromass contribution to soil organic matter

(2019) Chao Liang et al.   GLOBAL CHANGE BIOLOGY

Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples

(2019) Lucas Czech et al.   PLoS One

Dynamic Metabolic Rewiring Enables Efficient Acetyl Coenzyme A Assimilation in Paracoccus denitrificans

(2019) Katharina Kremer et al.   mBio

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests

(2019) Amélie Dukunde et al.   Frontiers in Microbiology

Microbial community structure and the relationship with soil carbon and nitrogen in an original Korean pine forest of Changbai Mountain, China

(2019) Minghui Liu et al.   BMC MICROBIOLOGY

Root litter inputs exert greater influence over soil C than does aboveground litter in a subtropical natural forest

(2019) Xiaofei Liu et al.   PLANT AND SOIL

The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge

(2019) Lachlan B. M. Speirs et al.   Frontiers in Microbiology

Dark microbial CO 2 fixation in temperate forest soils increases with CO 2 concentration

(2019) Marie Spohn et al.   GLOBAL CHANGE BIOLOGY

Plant roots increase both decomposition and stable organic matter formation in boreal forest soil

(2019) Bartosz Adamczyk et al.   Nature Communications

Microbial CO2 assimilation is not limited by the decrease in autotrophic bacterial abundance and diversity in eroded watershed

(2018) Haibing Xiao et al.   BIOLOGY AND FERTILITY OF SOILS

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

(2018) Stephanie A. Eichorst et al.   ENVIRONMENTAL MICROBIOLOGY

The Temperature Sensitivity (Q10) of Soil Respiration: Controlling Factors and Spatial Prediction at Regional Scale Based on Environmental Soil Classes

(2018) N. Meyer et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Metagenomic and 13 C tracing evidence for autotrophic atmospheric carbon absorption in a semiarid desert

(2018) Zhen Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Significance of dark CO 2 fixation in arctic soils

(2018) Hana Šantrůčková et al.   SOIL BIOLOGY & BIOCHEMISTRY

Priming effects of soil organic matter decomposition with addition of different carbon substrates

(2018) Zhiyuan Zhang et al.   JOURNAL OF SOILS AND SEDIMENTS

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Soil microbial anaplerotic CO2 fixation in temperate soils

(2018) Jacques A. Nel et al.   GEODERMA

Ectomycorrhizal and saprotrophic soil fungal biomass are driven by different factors and vary among broadleaf and coniferous temperate forests

(2018) Abdallah Awad et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Tree species diversity affects decomposition through modified micro-environmental conditions across European forests

(2017) François-Xavier Joly et al.   NEW PHYTOLOGIST

Sample Preparation at the Jena 14C Laboratory

(2017) A Steinhof et al.   RADIOCARBON

Do temperate tree species diversity and identity influence soil microbial community function and composition?

(2017) Rim Khlifa et al.   Ecology and Evolution

Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation

(2016) Yu Xia et al.   Biotechnology for Biofuels

Fine-root distribution, production, decomposition, and effect on soil organic carbon of three revegetation shrub species in northwest China

(2016) Zongrui Lai et al.   FOREST ECOLOGY AND MANAGEMENT

Soil Carbon-Fixation Rates and Associated Bacterial Diversity and Abundance in Three Natural Ecosystems

(2016) Tin Mar Lynn et al.   MICROBIAL ECOLOGY

Comparative analysis of metabolic machinery of Frankia along with other selected actinobacteria

(2016) Subarna Thakur et al.   SYMBIOSIS

Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce

(2016) Heiko Nacke et al.   Frontiers in Microbiology

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

(2016) Kristin Kaiser et al.   Scientific Reports

Large Fractions of CO2-Fixing Microorganisms in Pristine Limestone Aquifers Appear To Be Involved in the Oxidation of Reduced Sulfur and Nitrogen Compounds

(2015) Martina Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22T

(2015) Kevin C. Y. Lee et al.   Standards in Genomic Sciences

High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy

(2015) Hyo Jung Lee et al.   Frontiers in Microbiology

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil

(2015) Xiaohong Wu et al.   Frontiers in Microbiology

Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette

(2014) Felix Beulig et al.   ISME Journal

Changes in bacterial CO2 fixation with depth in agricultural soils

(2013) Xiaohong Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biological indicators of soil quality and soil organic matter characteristics in an agricultural management continuum

(2013) Kristen S. Veum et al.   BIOGEOCHEMISTRY

Distinguishing dissolved organic matter at its origin: Size and optical properties of leaf-litter leachates

(2013) C.W. Cuss et al.   CHEMOSPHERE

Do tree species influence soil carbon stocks in temperate and boreal forests?

(2013) Lars Vesterdal et al.   FOREST ECOLOGY AND MANAGEMENT

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

(2013) Christian G Klatt et al.   ISME Journal

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

(2013) Stéphane Uroz et al.   PLoS One

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics and 13C-Labeling Study

(2013) Song Yang et al.   Frontiers in Microbiology

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen

(2012) Martina Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

CO2 uptake by a soil microcosm

(2012) Kris M. Hart et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways

(2011) Ivan A. Berg   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carboxylases in Natural and Synthetic Microbial Pathways

(2011) Tobias J. Erb   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

CO2 utilizing microbes — A comprehensive review

(2011) Rashmi Saini et al.   BIOTECHNOLOGY ADVANCES

Diversity and expression of different forms of RubisCO genes in polluted groundwater under different redox conditions

(2011) Albin Alfreider et al.   FEMS MICROBIOLOGY ECOLOGY

Eikelboom's morphotype 0803 in activated sludge belongs to the genus Caldilinea in the phylum Chloroflexi

(2011) Caroline Kragelund et al.   FEMS MICROBIOLOGY ECOLOGY

Importance of root derived carbon for soil organic matter storage in a temperate old-growth beech forest – Evidence from C, N and 14C content

(2011) Cindy Tefs et al.   FOREST ECOLOGY AND MANAGEMENT

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

A survey of carbon fixation pathways through a quantitative lens

(2011) Arren Bar-Even et al.   JOURNAL OF EXPERIMENTAL BOTANY

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

(2010) Markus Fischer et al.   BASIC AND APPLIED ECOLOGY

The Apparent Malate Synthase Activity of Rhodobacter sphaeroides Is Due to Two Paralogous Enzymes, (3S)-Malyl-Coenzyme A (CoA)/ -Methylmalyl-CoA Lyase and (3S)- Malyl-CoA Thioesterase

(2010) T. J. Erb et al.   JOURNAL OF BACTERIOLOGY

Widespread coupling between the rate and temperature sensitivity of organic matter decay

(2010) Joseph M. Craine et al.   Nature Geoscience

Design and analysis of synthetic carbon fixation pathways

(2010) A. Bar-Even et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct and indirect effects of tree diversity drive soil microbial diversity in temperate deciduous forest

(2010) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Radiocarbon and Soil Carbon Dynamics

(2009) Susan Trumbore   Annual Review of Earth and Planetary Sciences

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global patterns in belowground communities

(2009) Noah Fierer et al.   ECOLOGY LETTERS

Carbon and nitrogen in forest floor and mineral soil under six common European tree species

(2007) Lars Vesterdal et al.   FOREST ECOLOGY AND MANAGEMENT