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Title
Addressing biological uncertainties in engineering gene circuits
Authors
Keywords
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Journal
Integrative Biology
Volume 8, Issue 4, Pages 456-464
Publisher
Royal Society of Chemistry (RSC)
Online
2015-12-10
DOI
10.1039/c5ib00275c
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Note: Only part of the references are listed.- Synthetic Biology—Toward Therapeutic Solutions
- (2016) Viktor Haellman et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2015) James E Dahlman et al. NATURE BIOTECHNOLOGY
- A light-inducible CRISPR-Cas9 system for control of endogenous gene activation
- (2015) Lauren R Polstein et al. Nature Chemical Biology
- DNA sense-and-respond protein modules for mammalian cells
- (2015) Shimyn Slomovic et al. NATURE METHODS
- Quantifying cellular capacity identifies gene expression designs with reduced burden
- (2015) Francesca Ceroni et al. NATURE METHODS
- Methods for the directed evolution of proteins
- (2015) Michael S. Packer et al. NATURE REVIEWS GENETICS
- Rational design of a split-Cas9 enzyme complex
- (2015) Addison V. Wright et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanistic links between cellular trade-offs, gene expression, and growth
- (2015) Andrea Y. Weiße et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Emergent genetic oscillations in a synthetic microbial consortium
- (2015) Y. Chen et al. SCIENCE
- Targeted DNA degradation using a CRISPR device stably carried in the host genome
- (2015) Brian J. Caliando et al. Nature Communications
- The development and characterization of synthetic minimal yeast promoters
- (2015) Heidi Redden et al. Nature Communications
- Engineering Living Functional Materials
- (2015) Allen Y. Chen et al. ACS Synthetic Biology
- Stochastic Sensitivity Analysis and Kernel Inference via Distributional Data
- (2014) Bochong Li et al. BIOPHYSICAL JOURNAL
- The Transcription Factor Titration Effect Dictates Level of Gene Expression
- (2014) Robert C. Brewster et al. CELL
- Synthetic Biology Looks Good on Paper
- (2014) Allison J. Lopatkin et al. CELL
- Paper-Based Synthetic Gene Networks
- (2014) Keith Pardee et al. CELL
- Quorum-Sensing Crosstalk-Driven Synthetic Circuits: From Unimodality to Trimodality
- (2014) Fuqing Wu et al. CHEMISTRY & BIOLOGY
- Ultradian oscillations and pulses: coordinating cellular responses and cell fate decisions
- (2014) A. Isomura et al. DEVELOPMENT
- Multiplexed and Programmable Regulation of Gene Networks with an Integrated RNA and CRISPR/Cas Toolkit in Human Cells
- (2014) Lior Nissim et al. MOLECULAR CELL
- A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase
- (2014) T. H. Segall-Shapiro et al. Molecular Systems Biology
- Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
- (2014) A. A. Nielsen et al. Molecular Systems Biology
- Emergence of robust growth laws from optimal regulation of ribosome synthesis
- (2014) M. Scott et al. Molecular Systems Biology
- A semi-synthetic organism with an expanded genetic alphabet
- (2014) Denis A. Malyshev et al. NATURE
- Tunable protein degradation in bacteria
- (2014) D Ewen Cameron et al. NATURE BIOTECHNOLOGY
- A load driver device for engineering modularity in biological networks
- (2014) Deepak Mishra et al. NATURE BIOTECHNOLOGY
- Permanent genetic memory with >1-byte capacity
- (2014) Lei Yang et al. NATURE METHODS
- CRISPR-based self-cleaving mechanism for controllable gene delivery in human cells
- (2014) Richard Moore et al. NUCLEIC ACIDS RESEARCH
- A Continuous-Exchange Cell-Free Protein Synthesis System Based on Extracts from Cultured Insect Cells
- (2014) Marlitt Stech et al. PLoS One
- Bacterial growth laws reflect the evolutionary importance of energy efficiency
- (2014) Arijit Maitra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Noise in biology
- (2014) Lev S Tsimring REPORTS ON PROGRESS IN PHYSICS
- Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
- (2014) F. Farzadfard et al. SCIENCE
- Systematic Transfer of Prokaryotic Sensors and Circuits to Mammalian Cells
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- Towards a whole-cell modeling approach for synthetic biology
- (2013) Oliver Purcell et al. CHAOS
- Promoters maintain their relative activity levels under different growth conditions
- (2013) L. Keren et al. Molecular Systems Biology
- Synthetic mammalian transgene negative autoregulation
- (2013) V. Shimoga et al. Molecular Systems Biology
- Design of orthogonal genetic switches based on a crosstalk map of s, anti- s, and promoters
- (2013) V. A. Rhodius et al. Molecular Systems Biology
- Engineering dynamic pathway regulation using stress-response promoters
- (2013) Robert H Dahl et al. NATURE BIOTECHNOLOGY
- Characterization of 582 natural and synthetic terminators and quantification of their design constraints
- (2013) Ying-Ja Chen et al. NATURE METHODS
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- (2013) M. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The metabolic burden of cellulase expression by recombinant Saccharomyces cerevisiae Y294 in aerobic batch culture
- (2012) Eugéne van Rensburg et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
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- (2012) Ashty S. Karim et al. FEMS YEAST RESEARCH
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- (2012) A. Kimelman et al. GENOME RESEARCH
- Directed evolution as a powerful synthetic biology tool
- (2012) Ryan E. Cobb et al. METHODS
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- (2012) Tae Seok Moon et al. NATURE
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- (2012) Lei Qi et al. NATURE BIOTECHNOLOGY
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- (2012) Andreas Hilfinger et al. PHYSICAL REVIEW LETTERS
- Inducible, reversible system for the rapid and complete degradation of proteins in mammalian cells
- (2012) A. J. Holland et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cellular Decision Making and Biological Noise: From Microbes to Mammals
- (2011) Gábor Balázsi et al. CELL
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- (2011) John Karanicolas et al. MOLECULAR CELL
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- (2011) Jeffrey V. Wong et al. MOLECULAR CELL
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- Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’
- (2010) Alvin Tamsir et al. NATURE
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- (2010) Avigdor Eldar et al. NATURE
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- (2010) Sean C Sleight et al. Journal of Biological Engineering
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- (2009) James M Carothers et al. CURRENT OPINION IN BIOTECHNOLOGY
- The genotoxic potential of retroviral vectors is strongly modulated by vector design and integration site selection in a mouse model of HSC gene therapy
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- Listening to the noise: random fluctuations reveal gene network parameters
- (2009) Brian Munsky et al. Molecular Systems Biology
- A tunable synthetic mammalian oscillator
- (2009) Marcel Tigges et al. NATURE
- Diversity-based, model-guided construction of synthetic gene networks with predicted functions
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- Computer-aided design of functional protein interactions
- (2009) Daniel J Mandell et al. Nature Chemical Biology
- Emergent bistability by a growth-modulating positive feedback circuit
- (2009) Cheemeng Tan et al. Nature Chemical Biology
- HotSpot Wizard: a web server for identification of hot spots in protein engineering
- (2009) A. Pavelka et al. NUCLEIC ACIDS RESEARCH
- A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells
- (2008) Yutetsu Kuruma et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Continuous-exchange cell-free protein synthesis using PCR-generated DNA and an RNase E-deficient extract
- (2008) Soo Youn Jun et al. BIOTECHNIQUES
- AraC Regulatory Protein Mutants with Altered Effector Specificity
- (2008) Shuang-Yan Tang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Modular cell biology: retroactivity and insulation
- (2008) Domitilla Del Vecchio et al. Molecular Systems Biology
- A fast, robust and tunable synthetic gene oscillator
- (2008) Jesse Stricker et al. NATURE
- Using noise to probe and characterize gene circuits
- (2008) C. D. Cox et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterizing heterogeneous cellular responses to perturbations
- (2008) M. D. Slack et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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