Response of microbial nitrogen transformation processes to antibiotic stress in a drinking water reservoir

Over-Expression of Hypochlorite Inducible Major Facilitator Superfamily (MFS) Pumps Reduces Antimicrobial Drug Susceptibility by Increasing the Production of MexXY Mediated by ArmZ in Pseudomonas aeruginosa

(2021) Punyawee Dulyayangkul et al.   Frontiers in Microbiology

Metagenomic insights into the profile of antibiotic resistomes in a large drinking water reservoir

(2020) Chenyuan Dang et al.   ENVIRONMENT INTERNATIONAL

The bacterial microbiota in florfenicol contaminated soils: The antibiotic resistome and the nitrogen cycle

(2020) Mei Wang et al.   ENVIRONMENTAL POLLUTION

Hotspot of dissimilatory nitrate reduction to ammonium (DNRA) process in freshwater sediments of riparian zones

(2020) Shanyun Wang et al.   WATER RESEARCH

Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers

(2020) Shufeng Liu et al.   ISME Journal

Massive Nitrogen Loss Over the Western Indian Continental Shelf During Seasonal Anoxia: Evidence From Isotope Pairing Technique

(2020) Amit Sarkar et al.   Frontiers in Marine Science

Dominant denitrifying bacteria are important hosts of antibiotic resistance genes in pig farm anoxic-oxic wastewater treatment processes

(2020) Yiwen Yang et al.   ENVIRONMENT INTERNATIONAL

Role of algal accumulations on the partitioning between N2 production and dissimilatory nitrate reduction to ammonium in eutrophic lakes

(2020) Xingyu Jiang et al.   WATER RESEARCH

Dynamics of the antibiotic resistome in agricultural soils amended with different sources of animal manures over three consecutive years

(2020) Wenbo Liu et al.   JOURNAL OF HAZARDOUS MATERIALS

Antibiotic and metal resistance genes are closely linked with nitrogen-processing functions in municipal solid waste landfills

(2020) Panliang Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Multi-omics analysis reveals structure and function of biofilm microbial communities in a pre-denitrification biofilter

(2020) Lu Tian et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Coupling of denitrification and anaerobic ammonium oxidation with nitrification in sediments of the Yangtze Estuary: Importance and controlling factors

(2019) Cheng Liu et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Antibiotic pollution in surface fresh waters: Occurrence and effects

(2019) Marie-Claire Danner et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Structures of the wild-type MexAB–OprM tripartite pump reveal its complex formation and drug efflux mechanism

(2019) Kenta Tsutsumi et al.   Nature Communications

Metagenomic assembly provides a deep insight into the antibiotic resistome alteration induced by drinking water chlorination and its correlations with bacterial host changes

(2019) Shuyu Jia et al.   JOURNAL OF HAZARDOUS MATERIALS

Environmental media exert a bottleneck in driving the dynamics of antibiotic resistance genes in modern aquatic environment

(2019) Yihan Chen et al.   WATER RESEARCH

Long-term harvesting of reeds affects greenhouse gas emissions and microbial functional genes in alkaline wetlands

(2019) Fengqin Liu et al.   WATER RESEARCH

Thiosulfate as the electron acceptor in Sulfur Bioconversion-Associated Process (SBAP) for sewage treatment

(2019) Jin Qian et al.   WATER RESEARCH

Anaerobic biodegradation of trimethoprim with sulfate as an electron acceptor

(2019) Bin Liang et al.   Frontiers of Environmental Science & Engineering

Correction to: Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Effects of shrimp-aquaculture reclamation on sediment nitrate dissimilatory reduction processes in a coastal wetland of southeastern China

(2019) Dengzhou Gao et al.   ENVIRONMENTAL POLLUTION

Response of microbes to biochar strengthen nitrogen removal in subsurface flow constructed wetlands: Microbial community structure and metabolite characteristics

(2019) Chaoren Deng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Antibiotics in surface water and sediments from Hanjiang River, Central China: Occurrence, behavior and risk assessment

(2018) Ying Hu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Antibiotics and antibiotic resistance genes in global lakes: A review and meta-analysis

(2018) Yuyi Yang et al.   ENVIRONMENT INTERNATIONAL

Biogeochemical sulfur cycling coupling with dissimilatory nitrate reduction processes in freshwater sediments

(2018) Jin Zhu et al.   ENVIRONMENTAL REVIEWS

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Persistence of antibiotic resistance genes and bacterial community changes in drinking water treatment system: From drinking water source to tap water

(2018) Hao-Chang Su et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biogeochemical sulfur cycling coupling with dissimilatory nitrate reduction processes in freshwater sediments

(2018) Jin Zhu et al.   ENVIRONMENTAL REVIEWS

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

PER extended-spectrum β-lactamases originate from Pararheinheimera spp

(2018) Stefan Ebmeyer et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Antibiotics in water and sediments of Danjiangkou Reservoir, China: Spatiotemporal distribution and indicator screening

(2018) Si Li et al.   ENVIRONMENTAL POLLUTION

High-throughput profiling and analysis of antibiotic resistance genes in East Tiaoxi River, China

(2017) Ji Zheng et al.   ENVIRONMENTAL POLLUTION

Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate

(2017) Casper Thorup et al.   mBio

Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey

(2017) Liping Ma et al.   Microbiome

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

A review of the influence of treatment strategies on antibiotic resistant bacteria and antibiotic resistance genes

(2016) Virender K. Sharma et al.   CHEMOSPHERE

Dissimilatory nitrate reduction processes in sediments of urban river networks: Spatiotemporal variations and environmental implications

(2016) Lv Cheng et al.   ENVIRONMENTAL POLLUTION

Antibiotic resistance genes as an emerging environmental contaminant

(2016) Haley Sanderson et al.   ENVIRONMENTAL REVIEWS

Mechanisms of bacterial persistence during stress and antibiotic exposure

(2016) Alexander Harms et al.   SCIENCE

Antibiotic resistance genes as an emerging environmental contaminant

(2016) Haley Sanderson et al.   ENVIRONMENTAL REVIEWS

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

Comprehensive Evaluation of Antibiotics Emission and Fate in the River Basins of China: Source Analysis, Multimedia Modeling, and Linkage to Bacterial Resistance

(2015) Qian-Qian Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Bacterial adaptation to sublethal antibiotic gradients can change the ecological properties of multitrophic microbial communities

(2015) V.-P. Friman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Dissimilatory nitrate reduction processes and associated contribution to nitrogen removal in sediments of the Yangtze Estuary

(2015) Fengyu Deng et al.   Journal of Geophysical Research-Biogeosciences

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems

(2014) Simon Jon McIlroy et al.   ENVIRONMENTAL MICROBIOLOGY

A Novel Membrane Inlet Mass Spectrometer Method to Measure 15NH4+ for Isotope-Enrichment Experiments in Aquatic Ecosystems

(2014) Guoyu Yin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

Structure of the AcrAB–TolC multidrug efflux pump

(2014) Dijun Du et al.   NATURE

Chemical fertilizer pollution control using drip fertigation for conservation of water quality in Danjiangkou Reservoir

(2014) Ronghao Liu et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

The Fate of Nitrate in Intertidal Permeable Sediments

(2014) Hannah K. Marchant et al.   PLoS One