Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

Metagenomic Analysis Revealing Antibiotic Resistance Genes (ARGs) and Their Genetic Compartments in the Tibetan Environment

(2016) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic insights into ultraviolet disinfection effects on antibiotic resistome in biologically treated wastewater

(2016) Qing Hu et al.   WATER RESEARCH

The Ocean as a Global Reservoir of Antibiotic Resistance Genes

(2015) Stephen M. Hatosy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comprehensive Evaluation of Antibiotics Emission and Fate in the River Basins of China: Source Analysis, Multimedia Modeling, and Linkage to Bacterial Resistance

(2015) Qian-Qian Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial Community Shift Drives Antibiotic Resistance Promotion during Drinking Water Chlorination

(2015) Shuyu Jia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Presence of antibiotic resistant bacteria and antibiotic resistance genes in raw source water and treated drinking water

(2015) Scott Bergeron et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Genotypic characteristics of multidrug-resistantPseudomonas aeruginosafrom hospital wastewater treatment plant in Rio de Janeiro, Brazil

(2015) C.C. Miranda et al.   JOURNAL OF APPLIED MICROBIOLOGY

Quantitative Campylobacter spp., antibiotic resistance genes, and veterinary antibiotics in surface and ground water following manure application: Influence of tile drainage control

(2015) Steven K. Frey et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unexpected Challenges in Treating Multidrug-Resistant Gram-Negative Bacteria: Resistance to Ceftazidime-Avibactam in Archived Isolates of Pseudomonas aeruginosa

(2014) Marisa L. Winkler et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Reconstructing a Thauera genome from a hydrogenotrophic-denitrifying consortium using metagenomic sequence data

(2014) Yanping Mao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring Variation of Antibiotic Resistance Genes in Activated Sludge over a Four-Year Period through a Metagenomic Approach

(2013) Ying Yang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Prevalence of antibiotic resistance genes and their relationship with antibiotics in the Huangpu River and the drinking water sources, Shanghai, China

(2013) Lei Jiang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer

(2013) Shun’ichi Ishii et al.   Nature Communications

Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment

(2013) Yuanqing Chao et al.   Scientific Reports

Virulence potential and antibiotic susceptibility pattern of motile aeromonads associated with freshwater ornamental fish culture systems: a possible threat to public health

(2012) Krishnan Sreedharan et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Metagenomic insights into chlorination effects on microbial antibiotic resistance in drinking water

(2012) Peng Shi et al.   WATER RESEARCH

Distribution of antibiotic resistance genes in glacier environments

(2012) Takahiro Segawa et al.   Environmental Microbiology Reports

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Prevalence of Antibiotic Resistance in Drinking Water Treatment and Distribution Systems

(2009) C. Xi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antibiotic resistance genes in water environment

(2009) Xu-Xiang Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Herminiimonas glaciei sp. nov., a novel ultramicrobacterium from 3042 m deep Greenland glacial ice

(2009) J. Loveland-Curtze et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH