Functional filtering and random processes affect the assembly of microbial communities of snow algae blooms at Maritime Antarctic
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Functional filtering and random processes affect the assembly of microbial communities of snow algae blooms at Maritime Antarctic
Authors
Keywords
Metagenomes, Metabarcoding, Maritime Antarctic, Snow algae blooms, Snow microbial community
Journal
SCIENCE OF THE TOTAL ENVIRONMENT
Volume 805, Issue -, Pages 150305
Publisher
Elsevier BV
Online
2021-09-12
DOI
10.1016/j.scitotenv.2021.150305
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Polarization of microbial communities between competitive and cooperative metabolism
- (2021) Daniel Machado et al. Nature Ecology & Evolution
- Revealing the Characteristics of the Antarctic Snow Alga Chlorominima collina gen. et sp. nov. Through Taxonomy, Physiology, and Transcriptomics
- (2021) Francisca E. Gálvez et al. Frontiers in Plant Science
- Snow Algae Preferentially Grow on Fe-containing Minerals and Contribute to the Formation of Fe Phases
- (2020) Charity M. Phillips-Lander et al. GEOMICROBIOLOGY JOURNAL
- The microbiome of alpine snow algae shows a specific inter-kingdom connectivity and algae-bacteria interactions with supportive capacities
- (2020) Lisa Krug et al. ISME Journal
- Remote sensing reveals Antarctic green snow algae as important terrestrial carbon sink
- (2020) Andrew Gray et al. Nature Communications
- Variation in Snow Algae Blooms in the Coast Range of British Columbia
- (2020) Casey B. Engstrom et al. Frontiers in Microbiology
- Adaptation to Extreme Antarctic Environments Revealed by the Genome of a Sea Ice Green Alga
- (2020) Zhenhua Zhang et al. CURRENT BIOLOGY
- Molecular diversity of the microbial community in coloured snow from the Fildes Peninsula (King George Island, Maritime Antarctica)
- (2020) Wei Luo et al. POLAR BIOLOGY
- Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia
- (2020) Kurt M. Yakimovich et al. Frontiers in Microbiology
- Snow algae communities in Antarctica: metabolic and taxonomic composition
- (2019) Matthew P. Davey et al. NEW PHYTOLOGIST
- Microbial Ecology of Snow Reveals Taxa-Specific Biogeographical Structure
- (2019) Shawn P. Brown et al. MICROBIAL ECOLOGY
- Sanguina nivaloides and Sanguina aurantia gen. et spp. nov. (Chlorophyta):The taxonomy, phylogeny, biogeography and ecology of two newly recognized algae causing red and orange snow
- (2019) Lenka Procházková et al. FEMS MICROBIOLOGY ECOLOGY
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Microbial composition and photosynthesis in Antarctic snow algae communities: Integrating metabarcoding and pulse amplitude modulation fluorometry
- (2019) Daniela F. Soto et al. Algal Research-Biomass Biofuels and Bioproducts
- Dynamics of in situ growth and taxonomic structure of fungal communities in Alpine supraglacial debris
- (2019) Ciro Sannino et al. Fungal Ecology
- Inorganic carbon addition stimulates snow algae primary productivity
- (2018) Trinity L. Hamilton et al. ISME Journal
- Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
- (2018) Daniel Machado et al. NUCLEIC ACIDS RESEARCH
- Plasmids of Psychrotolerant Polaromonas spp. Isolated From Arctic and Antarctic Glaciers – Diversity and Role in Adaptation to Polar Environments
- (2018) Anna Ciok et al. Frontiers in Microbiology
- Bipolar dispersal of red-snow algae
- (2018) Takahiro Segawa et al. Nature Communications
- Rapid change in East Antarctic terrestrial vegetation in response to regional drying
- (2018) Sharon A. Robinson et al. Nature Climate Change
- MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
- (2018) Gherman V. Uritskiy et al. Microbiome
- Remote sensing of albedo-reducing snow algae and impurities in the Maritime Antarctica
- (2018) Pirjo Huovinen et al. ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING
- The role of microbes in snowmelt and radiative forcing on an Alaskan icefield
- (2017) Gerard Q. Ganey et al. Nature Geoscience
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Microbial Community Analysis of Colored Snow from an Alpine Snowfield in Northern Japan Reveals the Prevalence of Betaproteobacteria with Snow Algae
- (2017) Mia Terashima et al. Frontiers in Microbiology
- Regulation of Inducible Potassium Transporter KdpFABC by the KdpD/KdpE Two-Component System in Mycobacterium smegmatis
- (2017) Maria K. Ali et al. Frontiers in Microbiology
- Microbes influence the biogeochemical and optical properties of maritime Antarctic snow
- (2017) A. J. Hodson et al. Journal of Geophysical Research-Biogeosciences
- Prasiolales (Trebouxiophyceae, Chlorophyta) of the Svalbard Archipelago: diversity, biogeography and description of the new generaPrasionellaandPrasionema
- (2016) Svenja Heesch et al. EUROPEAN JOURNAL OF PHYCOLOGY
- Evidence of adaptation, niche separation and microevolution within the genus Polaromonas on Arctic and Antarctic glacial surfaces
- (2016) Jan Gawor et al. EXTREMOPHILES
- Primary productivity of snow algae communities on stratovolcanoes of the Pacific Northwest
- (2016) T. L. Hamilton et al. Geobiology
- Projected changes of Antarctic krill habitat by the end of the 21st century
- (2016) Andrea Piñones et al. GEOPHYSICAL RESEARCH LETTERS
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Microbial communities associated with Antarctic snow pack and their biogeochemical implications
- (2016) Runa Antony et al. MICROBIOLOGICAL RESEARCH
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Decoupling function and taxonomy in the global ocean microbiome
- (2016) S. Louca et al. SCIENCE
- The biogeography of red snow microbiomes and their role in melting arctic glaciers
- (2016) Stefanie Lutz et al. Nature Communications
- Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow
- (2016) Anna Lopatina et al. Frontiers in Microbiology
- Monitoring snow and ice surfaces on King George Island, Antarctic Peninsula, with high-resolution TerraSAR-X time series
- (2015) U. Falk et al. ANTARCTIC SCIENCE
- Fungi and Algae Co-Occur in Snow: An Issue of Shared Habitat or Algal Facilitation of Heterotrophs?
- (2015) Shawn P. Brown et al. ARCTIC ANTARCTIC AND ALPINE RESEARCH
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Metabolic dependencies drive species co-occurrence in diverse microbial communities
- (2015) Aleksej Zelezniak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Determinants of community structure in the global plankton interactome
- (2015) G. Lima-Mendez et al. SCIENCE
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
- (2014) Douglas W Fadrosh et al. Microbiome
- Insights into the biology and phylogeny of Chloromonas polyptera (Chlorophyta), an alga causing orange snow in Maritime Antarctica
- (2013) Daniel Remias et al. ANTARCTIC SCIENCE
- Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
- (2013) Luis M. Rodriguez-R et al. BIOINFORMATICS
- De novo transcriptome analysis of an Arctic microalga, Chlamydomonas sp.
- (2013) Sanghee Kim et al. Genes & Genomics
- The dynamic bacterial communities of a melting High Arctic glacier snowpack
- (2013) Katherina Hell et al. ISME Journal
- Hydrurus-related golden algae (Chrysophyceae) cause yellow snow in polar summer snowfields
- (2013) Daniel Remias et al. PHYCOLOGICAL RESEARCH
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- MOLECULAR PHYLOGENY OF ANTARCTIC PRASIOLA (PRASIOLALES, TREBOUXIOPHYCEAE) REVEALS EXTENSIVE CRYPTIC DIVERSITY1
- (2012) Mónica B. J. Moniz et al. JOURNAL OF PHYCOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Microbes in High Arctic Snow and Implications for the Cold Biosphere
- (2011) Tommy Harding et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Analysis of Stress Genes in Microbial Mat Communities from Antarctica and the High Arctic
- (2011) Thibault Varin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metabolic Characterization of cold active Pseudomonas, Arthrobacter, Bacillus, and Flavobacterium spp. from Western Himalayas
- (2011) Pooja Gangwar et al. INDIAN JOURNAL OF MICROBIOLOGY
- Bacterial community assembly based on functional genes rather than species
- (2011) C. Burke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser
- (2010) Thomas H Osborne et al. BMC MICROBIOLOGY
- Molecular cloning and expression analysis of a cytosolic Hsp70 gene from Antarctic ice algae Chlamydomonas sp. ICE-L
- (2010) Shenghao Liu et al. EXTREMOPHILES
- Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus
- (2010) Jonathan L. Klassen et al. EXTREMOPHILES
- Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing
- (2010) Man Kit Cheung et al. ISME Journal
- Abundance and community of snow bacteria from three glaciers in the Tibetan Plateau
- (2010) Shuhong Zhang et al. JOURNAL OF ENVIRONMENTAL SCIENCES
- Combined niche and neutral effects in a microbial wastewater treatment community
- (2010) I. D. Ofiteru et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
- (2009) Jane M. Yagi et al. ENVIRONMENTAL MICROBIOLOGY
- Relative roles of niche and neutral processes in structuring a soil microbial community
- (2009) Alex J Dumbrell et al. ISME Journal
- Microbial Community Structure, Pigment Composition, and Nitrogen Source of Red Snow in Antarctica
- (2009) Masanori Fujii et al. MICROBIAL ECOLOGY
- The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology
- (2008) T. E. Mattes et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Microbial Ecology of Ocean Biogeochemistry: A Community Perspective
- (2008) S. L. Strom SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search