Functional filtering and random processes affect the assembly of microbial communities of snow algae blooms at Maritime Antarctic

Polarization of microbial communities between competitive and cooperative metabolism

(2021) Daniel Machado et al.   Nature Ecology & Evolution

Revealing the Characteristics of the Antarctic Snow Alga Chlorominima collina gen. et sp. nov. Through Taxonomy, Physiology, and Transcriptomics

(2021) Francisca E. Gálvez et al.   Frontiers in Plant Science

Snow Algae Preferentially Grow on Fe-containing Minerals and Contribute to the Formation of Fe Phases

(2020) Charity M. Phillips-Lander et al.   GEOMICROBIOLOGY JOURNAL

The microbiome of alpine snow algae shows a specific inter-kingdom connectivity and algae-bacteria interactions with supportive capacities

(2020) Lisa Krug et al.   ISME Journal

Remote sensing reveals Antarctic green snow algae as important terrestrial carbon sink

(2020) Andrew Gray et al.   Nature Communications

Variation in Snow Algae Blooms in the Coast Range of British Columbia

(2020) Casey B. Engstrom et al.   Frontiers in Microbiology

Adaptation to Extreme Antarctic Environments Revealed by the Genome of a Sea Ice Green Alga

(2020) Zhenhua Zhang et al.   CURRENT BIOLOGY

Molecular diversity of the microbial community in coloured snow from the Fildes Peninsula (King George Island, Maritime Antarctica)

(2020) Wei Luo et al.   POLAR BIOLOGY

Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia

(2020) Kurt M. Yakimovich et al.   Frontiers in Microbiology

Snow algae communities in Antarctica: metabolic and taxonomic composition

(2019) Matthew P. Davey et al.   NEW PHYTOLOGIST

Microbial Ecology of Snow Reveals Taxa-Specific Biogeographical Structure

(2019) Shawn P. Brown et al.   MICROBIAL ECOLOGY

Sanguina nivaloides and Sanguina aurantia gen. et spp. nov. (Chlorophyta):The taxonomy, phylogeny, biogeography and ecology of two newly recognized algae causing red and orange snow

(2019) Lenka Procházková et al.   FEMS MICROBIOLOGY ECOLOGY

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Microbial composition and photosynthesis in Antarctic snow algae communities: Integrating metabarcoding and pulse amplitude modulation fluorometry

(2019) Daniela F. Soto et al.   Algal Research-Biomass Biofuels and Bioproducts

Dynamics of in situ growth and taxonomic structure of fungal communities in Alpine supraglacial debris

(2019) Ciro Sannino et al.   Fungal Ecology

Inorganic carbon addition stimulates snow algae primary productivity

(2018) Trinity L. Hamilton et al.   ISME Journal

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities

(2018) Daniel Machado et al.   NUCLEIC ACIDS RESEARCH

Plasmids of Psychrotolerant Polaromonas spp. Isolated From Arctic and Antarctic Glaciers – Diversity and Role in Adaptation to Polar Environments

(2018) Anna Ciok et al.   Frontiers in Microbiology

Bipolar dispersal of red-snow algae

(2018) Takahiro Segawa et al.   Nature Communications

Rapid change in East Antarctic terrestrial vegetation in response to regional drying

(2018) Sharon A. Robinson et al.   Nature Climate Change

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

Remote sensing of albedo-reducing snow algae and impurities in the Maritime Antarctica

(2018) Pirjo Huovinen et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

The role of microbes in snowmelt and radiative forcing on an Alaskan icefield

(2017) Gerard Q. Ganey et al.   Nature Geoscience

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Microbial Community Analysis of Colored Snow from an Alpine Snowfield in Northern Japan Reveals the Prevalence of Betaproteobacteria with Snow Algae

(2017) Mia Terashima et al.   Frontiers in Microbiology

Regulation of Inducible Potassium Transporter KdpFABC by the KdpD/KdpE Two-Component System in Mycobacterium smegmatis

(2017) Maria K. Ali et al.   Frontiers in Microbiology

Microbes influence the biogeochemical and optical properties of maritime Antarctic snow

(2017) A. J. Hodson et al.   Journal of Geophysical Research-Biogeosciences

Prasiolales (Trebouxiophyceae, Chlorophyta) of the Svalbard Archipelago: diversity, biogeography and description of the new generaPrasionellaandPrasionema

(2016) Svenja Heesch et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Evidence of adaptation, niche separation and microevolution within the genus Polaromonas on Arctic and Antarctic glacial surfaces

(2016) Jan Gawor et al.   EXTREMOPHILES

Primary productivity of snow algae communities on stratovolcanoes of the Pacific Northwest

(2016) T. L. Hamilton et al.   Geobiology

Projected changes of Antarctic krill habitat by the end of the 21st century

(2016) Andrea Piñones et al.   GEOPHYSICAL RESEARCH LETTERS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Microbial communities associated with Antarctic snow pack and their biogeochemical implications

(2016) Runa Antony et al.   MICROBIOLOGICAL RESEARCH

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

The biogeography of red snow microbiomes and their role in melting arctic glaciers

(2016) Stefanie Lutz et al.   Nature Communications

Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow

(2016) Anna Lopatina et al.   Frontiers in Microbiology

Monitoring snow and ice surfaces on King George Island, Antarctic Peninsula, with high-resolution TerraSAR-X time series

(2015) U. Falk et al.   ANTARCTIC SCIENCE

Fungi and Algae Co-Occur in Snow: An Issue of Shared Habitat or Algal Facilitation of Heterotrophs?

(2015) Shawn P. Brown et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Insights into the biology and phylogeny of Chloromonas polyptera (Chlorophyta), an alga causing orange snow in Maritime Antarctica

(2013) Daniel Remias et al.   ANTARCTIC SCIENCE

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets

(2013) Luis M. Rodriguez-R et al.   BIOINFORMATICS

De novo transcriptome analysis of an Arctic microalga, Chlamydomonas sp.

(2013) Sanghee Kim et al.   Genes & Genomics

The dynamic bacterial communities of a melting High Arctic glacier snowpack

(2013) Katherina Hell et al.   ISME Journal

Hydrurus-related golden algae (Chrysophyceae) cause yellow snow in polar summer snowfields

(2013) Daniel Remias et al.   PHYCOLOGICAL RESEARCH

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

MOLECULAR PHYLOGENY OF ANTARCTIC PRASIOLA (PRASIOLALES, TREBOUXIOPHYCEAE) REVEALS EXTENSIVE CRYPTIC DIVERSITY1

(2012) Mónica B. J. Moniz et al.   JOURNAL OF PHYCOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Microbes in High Arctic Snow and Implications for the Cold Biosphere

(2011) Tommy Harding et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analysis of Stress Genes in Microbial Mat Communities from Antarctica and the High Arctic

(2011) Thibault Varin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic Characterization of cold active Pseudomonas, Arthrobacter, Bacillus, and Flavobacterium spp. from Western Himalayas

(2011) Pooja Gangwar et al.   INDIAN JOURNAL OF MICROBIOLOGY

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser

(2010) Thomas H Osborne et al.   BMC MICROBIOLOGY

Molecular cloning and expression analysis of a cytosolic Hsp70 gene from Antarctic ice algae Chlamydomonas sp. ICE-L

(2010) Shenghao Liu et al.   EXTREMOPHILES

Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus

(2010) Jonathan L. Klassen et al.   EXTREMOPHILES

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing

(2010) Man Kit Cheung et al.   ISME Journal

Abundance and community of snow bacteria from three glaciers in the Tibetan Plateau

(2010) Shuhong Zhang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer

(2009) Jane M. Yagi et al.   ENVIRONMENTAL MICROBIOLOGY

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Microbial Community Structure, Pigment Composition, and Nitrogen Source of Red Snow in Antarctica

(2009) Masanori Fujii et al.   MICROBIAL ECOLOGY

The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology

(2008) T. E. Mattes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Ecology of Ocean Biogeochemistry: A Community Perspective

(2008) S. L. Strom   SCIENCE