Low-level environmental metal pollution is associated with altered gut microbiota of a wild rodent, the bank vole (Myodes glareolus)

Spatio-temporal variation of metals and organic contaminants in bank voles (Myodes glareolus)

(2020) Frauke Ecke et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Long-term metal exposure changes gut microbiota of residents surrounding a mining and smelting area

(2020) Mengmeng Shao et al.   Scientific Reports

Reproductive hormones mediate changes in the gut microbiome during pregnancy and lactation in Phayre’s leaf monkeys

(2020) Elizabeth K. Mallott et al.   Scientific Reports

The Role of Selenium in Arsenic and Cadmium Toxicity: an Updated Review of Scientific Literature

(2019) Iwona Zwolak   BIOLOGICAL TRACE ELEMENT RESEARCH

Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

(2019) Xuanji Li et al.   ENVIRONMENT INTERNATIONAL

Host genetic determinants of the gut microbiota of wild mice

(2019) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Habitat fragmentation is associated with dietary shifts and microbiota variability in common vampire bats

(2019) Melissa R. Ingala et al.   Ecology and Evolution

Gut microbiota: An underestimated and unintended recipient for pesticide-induced toxicity

(2019) Xianling Yuan et al.   CHEMOSPHERE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

(2019) Nicholas D. Youngblut et al.   Nature Communications

Establishing microbial composition measurement standards with reference frames

(2019) James T. Morton et al.   Nature Communications

Urinary lead concentration and composition of the adult gut microbiota in a cross-sectional population-based sample

(2019) Shoshannah Eggers et al.   ENVIRONMENT INTERNATIONAL

Leaves, berries and herbivorous larvae of bilberry Vaccinium myrtillus as sources of metals in food chains at a Cu-Ni smelter site

(2018) Tapio Eeva et al.   CHEMOSPHERE

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus

(2018) Anton Lavrinienko et al.   ISME Journal

The gut microbiota of wild rodents: Challenges and opportunities

(2018) Mark Viney   LABORATORY ANIMALS

Seasonal shift of diet in bank voles explains trophic fate of anthropogenic osmium?

(2018) Frauke Ecke et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Human Gut Microbiome: Function Matters

(2018) Anna Heintz-Buschart et al.   TRENDS IN MICROBIOLOGY

Exposure to toxic metals triggers unique responses from the rat gut microbiota

(2018) Joshua B. Richardson et al.   Scientific Reports

DIVERSITY OF ACARI AND COLLEMBOLA ALONG A POLLUTION GRADIENT IN SOILS OF A PRE-PYRENEAN FOREST ECOSYSTEM

(2018) Jesus Miguel Santamaria et al.   Environmental Engineering and Management Journal

Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance

(2018) Aspen T. Reese et al.   mBio

Effects of Dietary Selenium Supplementation on Intestinal Barrier and Immune Responses Associated with Its Modulation of Gut Microbiota

(2018) Qixiao Zhai et al.   Environmental Science & Technology Letters

Metal and metalloid exposure and oxidative status in free-living individuals of Myotis daubentonii

(2018) Sandra R. Ruiz et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Review of Cr(VI) environmental practices in the chromite mining and smelting industry – Relevance to development of the Ring of Fire, Canada

(2017) J.P. Beukes et al.   JOURNAL OF CLEANER PRODUCTION

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

The coefficient of determination R 2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded

(2017) Shinichi Nakagawa et al.   Journal of the Royal Society Interface

Telomere damage and redox status alterations in free-living passerines exposed to metals

(2017) Janina Stauffer et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The Intestinal Eukaryotic and Bacterial Biome of Spotted Hyenas: The Impact of Social Status and Age on Diversity and Composition

(2017) Emanuel Heitlinger et al.   Frontiers in Cellular and Infection Microbiology

Gut Dysbiosis in Animals Due to Environmental Chemical Exposures

(2017) Cheryl S. Rosenfeld   Frontiers in Cellular and Infection Microbiology

Effects of subchronic oral toxic metal exposure on the intestinal microbiota of mice

(2017) Qixiao Zhai et al.   Science Bulletin

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Sex-Specific Effects of Arsenic Exposure on the Trajectory and Function of the Gut Microbiome

(2016) Liang Chi et al.   CHEMICAL RESEARCH IN TOXICOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Long-term effect of heavy-metal pollution on diversity of gastrointestinal microbial community of Bufo raddei

(2016) Wenya Zhang et al.   TOXICOLOGY LETTERS

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System

(2016) Sean M. Gibbons et al.   mBio

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Gut Microbiome Phenotypes Driven by Host Genetics Affect Arsenic Metabolism

(2014) Kun Lu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Arsenic Exposure Perturbs the Gut Microbiome and Its Metabolic Profile in Mice: An Integrated Metagenomics and Metabolomics Analysis

(2014) Kun Lu et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

First Report of Anaplasma phagocytophilum and Babesia microti in Rodents in Finland

(2014) Eva R. Kallio et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Defining and defending Connell's intermediate disturbance hypothesis: a response to Fox

(2013) Douglas Sheil et al.   TRENDS IN ECOLOGY & EVOLUTION

Are radiosensitivity data derived from natural field conditions consistent with data from controlled exposures? A case study of Chernobyl wildlife chronically exposed to low dose rates

(2012) J. Garnier-Laplace et al.   JOURNAL OF ENVIRONMENTAL RADIOACTIVITY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Diet differentiation between European arvicoline and murine rodents

(2011) Alain Butet et al.   ACTA THERIOLOGICA

Dietary selenium affects host selenoproteome expression by influencing the gut microbiota

(2011) Marina V. Kasaikina et al.   FASEB JOURNAL

AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons

(2010) Kenneth P. Burnham et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

A brief guide to model selection, multimodel inference and model averaging in behavioural ecology using Akaike’s information criterion

(2010) Matthew R. E. Symonds et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uptake and Accumulation of Anthropogenic Os in Free-Living Bank Voles (Myodes glareolus)

(2010) Ilia Rodushkin et al.   WATER AIR AND SOIL POLLUTION

Sources of contamination and remedial strategies in the multi-elemental trace analysis laboratory

(2009) Ilia Rodushkin et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Small Mammals Collected from a Site with Elevated Selenium Concentrations and Three Reference Sites

(2009) Gary M. Santolo   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Bioaccumulation of metals and effects of a landfill in small mammals Part III: Structural alterations

(2009) Alejandro Sánchez-Chardi et al.   ENVIRONMENTAL RESEARCH

Effects of environmental change on wildlife health

(2009) K. Acevedo-Whitehouse et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Leg deformities of oribatid mites as an indicator of environmental pollution

(2009) Tapio Eeva et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Leaching behavior of pollutants in ferrochrome arc furnace dust and its stabilization/solidification using ferrous sulphate and Portland cement

(2008) Ulkü Bulut et al.   JOURNAL OF HAZARDOUS MATERIALS