Global drivers of eukaryotic plankton biogeography in the sunlit ocean

A metagenomic assessment of microbial eukaryotic diversity in the global ocean

(2020) Aleix Obiol et al.   Molecular Ecology Resources

Diatoms Are Selective Segregators in Global Ocean Planktonic Communities

(2020) Flora Vincent et al.   mSystems

Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform

(2020) Jaeho Choi et al.   Scientific Reports

Global pattern of phytoplankton diversity driven by temperature and environmental variability

(2019) Damiano Righetti et al.   Science Advances

Global Trends in Marine Plankton Diversity across Kingdoms of Life

(2019) Federico M. Ibarbalz et al.   CELL

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

(2019) Guilhem Sommeria‐Klein et al.   Molecular Ecology Resources

How Do Marine Pelagic Species Respond to Climate Change? Theories and Observations

(2018) Grégory Beaugrand et al.   Annual Review of Marine Science

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Large-scale ocean connectivity and planktonic body size

(2018) Ernesto Villarino et al.   Nature Communications

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Oceanographic boundaries constrain microbial diversity gradients in the South Pacific Ocean

(2018) Eric J. Raes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona

(2017) Mohammed-Amin Madoui et al.   MOLECULAR ECOLOGY

Global determinants of zoogeographical boundaries

(2017) Gentile Francesco Ficetola et al.   Nature Ecology & Evolution

Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation

(2016) Maria T. Kavanaugh et al.   ICES JOURNAL OF MARINE SCIENCE

The timescales of global surface-ocean connectivity

(2016) Bror F. Jönsson et al.   Nature Communications

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

topicmodels: AnRPackage for Fitting Topic Models

(2015) Bettina Grün et al.   Journal of Statistical Software

Decomposing biodiversity data using the Latent Dirichlet Allocation model, a probabilistic multivariate statistical method

(2014) Denis Valle et al.   ECOLOGY LETTERS

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

(2014) Micah Dunthorn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model

(2014) F. L. Hellweger et al.   SCIENCE

Broad impacts of fine-scale dynamics on seascape structure from zooplankton to seabirds

(2014) Arnaud Bertrand et al.   Nature Communications

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects

(2013) David Wilkins et al.   Nature Communications

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Currents connecting communities: nearshore community similarity and ocean circulation

(2011) J. R. Watson et al.   ECOLOGY

Global patterns and predictors of marine biodiversity across taxa

(2010) Derek P. Tittensor et al.   NATURE