Cell division in the shoot apical meristem is a trigger for miR156 decline and vegetative phase transition in Arabidopsis

VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms

(2021) Jim P. Fouracre et al.   PLoS Genetics

Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis

(2020) Fu-Xiang Wang et al.   DEVELOPMENTAL CELL

Temperature-dependent growth contributes to long-term cold sensing

(2020) Yusheng Zhao et al.   NATURE

MiR156 regulates anthocyanin biosynthesis through SPL targets and other microRNAs in poplar

(2020) Yamei Wang et al.   Horticulture Research

HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development

(2019) Kevin S Mayer et al.   PLANT PHYSIOLOGY

Molecular and Environmental Regulation of Root Development

(2019) Hans Motte et al.   Annual Review of Plant Biology

Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana

(2018) Jia He et al.   PLoS Genetics

Repression of miR156 by miR159 Regulates the Timing of the Juvenile-to-Adult Transition in Arabidopsis

(2017) Changkui Guo et al.   PLANT CELL

Differential TOR activation and cell proliferation inArabidopsisroot and shoot apexes

(2017) Xiaojuan Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

(2017) Angharad R. Jones et al.   Nature Communications

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Patterns of Stem Cell Divisions Contribute to Plant Longevity

(2016) Agata Burian et al.   CURRENT BIOLOGY

The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae

(2016) Marc R. Gartenberg et al.   GENETICS

TRANSPORTIN1 Promotes the Association of MicroRNA with ARGONAUTE1 in Arabidopsis

(2016) Yuwei Cui et al.   PLANT CELL

Regulation of Vegetative Phase Change by SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA

(2016) Yunmin Xu et al.   PLANT PHYSIOLOGY

Histone deacetylase HDA6 enhances brassinosteroid signaling by inhibiting the BIN2 kinase

(2016) Yuhan Hao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Germline replications and somatic mutation accumulation are independent of vegetative life span inArabidopsis

(2016) J. Matthew Watson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites inArabidopsis

(2016) Yun Ju Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis

(2016) Xiangsong Chen et al.   eLife

Integration of light and metabolic signals for stem cell activation at the shoot apical meristem

(2016) Anne Pfeiffer et al.   eLife

The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae

(2016) Marc R. Gartenberg et al.   GENETICS

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

Plant developmental transitions: the role of microRNAs and sugars

(2015) Sha Yu et al.   CURRENT OPINION IN PLANT BIOLOGY

O Cell, Where Art Thou? The mechanisms of shoot meristem patterning

(2015) Christophe Gaillochet et al.   CURRENT OPINION IN PLANT BIOLOGY

Expression of the Floral Repressor miRNA156 is Positively Regulated by the AGAMOUS-like Proteins AGL15 and AGL18

(2015) Phanu Serivichyaswat et al.   MOLECULES AND CELLS

MutMap accelerates breeding of a salt-tolerant rice cultivar

(2015) Hiroki Takagi et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Epigenetic Regulation of Vegetative Phase Change in Arabidopsis

(2015) Mingli Xu et al.   PLANT CELL

Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis

(2015) Sara Picó et al.   PLANT PHYSIOLOGY

RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK

(2015) Ryan F. McCormick et al.   G3-Genes Genomes Genetics

Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance

(2015) Scott Berry et al.   eLife

Maturation and related aspects in clonal forestry—Part I: concepts, regulation and consequences of phase change

(2014) Ivar Wendling et al.   NEW FORESTS

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Reference genes for normalizing transcription in diploid and tetraploid Arabidopsis

(2014) Haibin Wang et al.   Scientific Reports

Signaling in shoot and flower meristems of Arabidopsis thaliana

(2013) Anna L Holt et al.   CURRENT OPINION IN PLANT BIOLOGY

Glucose–TOR signalling reprograms the transcriptome and activates meristems

(2013) Yan Xiong et al.   NATURE

Identification of Direct Targets of FUSCA3, a Key Regulator of Arabidopsis Seed Development

(2013) F. Wang et al.   PLANT PHYSIOLOGY

Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana

(2013) V. Wahl et al.   SCIENCE

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

(2013) Patrick May et al.   Nature Communications

Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C

(2013) Li Yang et al.   eLife

Sugar is an endogenous cue for juvenile-to-adult phase transition in plants

(2013) Sha Yu et al.   eLife

Control ofArabidopsisRoot Development

(2012) Jalean J. Petricka et al.   Annual Review of Plant Biology

Limitations and possibilities of low cell number ChIP-seq

(2012) Gregor D Gilfillan et al.   BMC GENOMICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice

(2012) K. Xie et al.   PLANT PHYSIOLOGY

MicroRNAs and developmental timing

(2011) Victor Ambros   CURRENT OPINION IN GENETICS & DEVELOPMENT

The control of developmental phase transitions in plants

(2011) P. Huijser et al.   DEVELOPMENT

A Polycomb-based switch underlying quantitative epigenetic memory

(2011) Andrew Angel et al.   NATURE

An Importin   Protein Negatively Regulates MicroRNA Activity in Arabidopsis

(2011) W. Wang et al.   PLANT CELL

MiRNA Control of Vegetative Phase Change in Trees

(2011) Jia-Wei Wang et al.   PLoS Genetics

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

(2010) Hanna Lee et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Small RNAs and developmental timing in plants

(2009) R Scott Poethig   CURRENT OPINION IN GENETICS & DEVELOPMENT

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

(2009) Korbinian Schneeberger et al.   NATURE METHODS

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana

(2008) J.-W. Wang et al.   PLANT CELL