eDNA captures depth partitioning in a kelp forest ecosystem

Short-lived detection of an introduced vertebrate eDNA signal in a nearshore rocky reef environment

(2021) Taylor Ely et al.   PLoS One

Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities

(2021) Thomas Lamy et al.   Scientific Reports

Dispersion and degradation of environmental DNA from caged fish in a marine environment

(2019) Hiroaki Murakami et al.   FISHERIES SCIENCE

Correction: The Release Rate of Environmental DNA from Juvenile and Adult Fish

(2019) Atsushi Maruyama et al.   PLoS One

Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA

(2019) Kathryn A. Stewart   BIODIVERSITY AND CONSERVATION

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales

(2018) Michael D. Tillotson et al.   BIOLOGICAL CONSERVATION

eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity

(2018) Anaïs Lacoursière-Roussel et al.   Ecology and Evolution

The effect of tides on nearshore environmental DNA

(2018) Ryan P. Kelly et al.   PeerJ

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

Spatial distribution of environmental DNA in a nearshore marine habitat

(2017) James L. O’Donnell et al.   PeerJ

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding

(2017) Elizabeth A. Andruszkiewicz et al.   PLoS One

Quantification of Environmental DNA (eDNA) Shedding and Decay Rates for Three Marine Fish

(2016) Lauren M. Sassoubre et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter

(2016) Johan Spens et al.   Methods in Ecology and Evolution

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

(2016) Eva Egelyng Sigsgaard et al.   Nature Ecology & Evolution

Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

(2016) Satoshi Yamamoto et al.   PLoS One

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

(2015) Katy E. Klymus et al.   BIOLOGICAL CONSERVATION

Fish environmental DNA is more concentrated in aquatic sediments than surface water

(2015) Cameron R. Turner et al.   BIOLOGICAL CONSERVATION

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Vertical zonation is the main distribution pattern of littoral assemblages on rocky shores at a regional scale

(2014) Eglantine Chappuis et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Biogenic inputs to ocean mixing

(2012) K. Katija   JOURNAL OF EXPERIMENTAL BIOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Gradient forests: calculating importance gradients on physical predictors

(2011) Nick Ellis et al.   ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Relative Decay of Bacteroidales Microbial Source Tracking Markers and Cultivated Escherichia coli in Freshwater Microcosms

(2010) L. K. Dick et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Plant leaf mass loss and DNA release in freshwater sediments

(2009) John Poté et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Vertical distribution of barnacle larvae at a fixed nearshore station in southern California: Stage-specific and diel patterns

(2009) Fabián J. Tapia et al.   ESTUARINE COASTAL AND SHELF SCIENCE

A viscosity-enhanced mechanism for biogenic ocean mixing

(2009) Kakani Katija et al.   NATURE

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

(2008) C. CORINALDESI et al.   MOLECULAR ECOLOGY