WRKY transcription factors and ethylene signaling modify root growth during the shade-avoidance response

Regulation of Lateral Root Development by Shoot-Sensed Far-Red Light via HY5 Is Nitrate-Dependent and Involves the NRT2.1 Nitrate Transporter

(2021) Kasper van Gelderen et al.   Frontiers in Plant Science

Shaping Ethylene Response: The Role of EIN3/EIL1 Transcription Factors

(2019) Vladislav A. Dolgikh et al.   Frontiers in Plant Science

The JA‐pathway MYC transcription factors regulate photomorphogenic responses by targeting HY5 gene expression

(2019) Andrés Ortigosa et al.   PLANT JOURNAL

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Far-Red Light Detection in the Shoot Regulates Lateral Root Development through the HY5 Transcription Factor

(2018) Kasper van Gelderen et al.   PLANT CELL

Activation of rice WRKY transcription factors: an army of stress fighting soldiers?

(2018) Vívian Ebeling Viana et al.   CURRENT OPINION IN PLANT BIOLOGY

Principles and characteristics of the Arabidopsis WRKY regulatory network during early MAMP-triggered immunity

(2018) Rainer P. Birkenbihl et al.   PLANT JOURNAL

Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence

(2017) Ligang Chen et al.   Molecular Plant

Expanding Roles of PIFs in Signal Integration from Multiple Processes

(2017) Inyup Paik et al.   Molecular Plant

A Tripartite Amplification Loop Involving the Transcription Factor WRKY75, Salicylic Acid, and Reactive Oxygen Species Accelerates Leaf Senescence

(2017) Pengru Guo et al.   PLANT CELL

Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering

(2017) Liping Zhang et al.   PLANT PHYSIOLOGY

Models for gene duplication when dosage balance works as a transition state to subsequent neo- or sub-functionalization

(2016) Ashley I. Teufel et al.   BMC EVOLUTIONARY BIOLOGY

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

(2016) Ullas V. Pedmale et al.   CELL

Integration of Phytochrome and Cryptochrome Signals Determines Plant Growth during Competition for Light

(2016) Mieke de Wit et al.   CURRENT BIOLOGY

Shoot-to-Root Mobile Transcription Factor HY5 Coordinates Plant Carbon and Nitrogen Acquisition

(2016) Xiangbin Chen et al.   CURRENT BIOLOGY

Convergence of CONSTITUTIVE PHOTOMORPHOGENESIS 1 and PHYTOCHROME INTERACTING FACTOR signalling during shade avoidance

(2016) Manuel Pacín et al.   NEW PHYTOLOGIST

Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity

(2016) Rainer P. Birkenbihl et al.   PLANT CELL

Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth

(2016) Markus V. Kohnen et al.   PLANT CELL

Phytochrome Interacting Factors (PIFs) in Solanum lycopersicum: Diversity, Evolutionary History and Expression Profiling during Different Developmental Processes

(2016) Daniele Rosado et al.   PLoS One

The evolution of WRKY transcription factors

(2015) Charles I Rinerson et al.   BMC PLANT BIOLOGY

Sensing the light environment in plants: photoreceptors and early signaling steps

(2015) Vinicius Costa Galvão et al.   CURRENT OPINION IN NEUROBIOLOGY

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci

(2015) Eirini Kaiserli et al.   DEVELOPMENTAL CELL

Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells

(2015) Liyuan Zhang et al.   PLANT SCIENCE

Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana

(2015) Katja Geilen et al.   Scientific Reports

Light Regulation of Plant Defense

(2014) Carlos L. Ballaré   Annual Review of Plant Biology

To grow or defend? Low red : far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability

(2014) Melisa Leone et al.   NEW PHYTOLOGIST

Arabidopsis WRKY45 Transcription Factor Activates PHOSPHATE TRANSPORTER1;1 Expression in Response to Phosphate Starvation

(2014) H. Wang et al.   PLANT PHYSIOLOGY

Phytochrome-interacting transcription factors PIF4 and PIF5 induce leaf senescence in Arabidopsis

(2014) Yasuhito Sakuraba et al.   Nature Communications

The Secreted Peptide PIP1 Amplifies Immunity through Receptor-Like Kinase 7

(2014) Shuguo Hou et al.   PLoS Pathogens

The roles of ethylene and transcription factors in the regulation of onset of leaf senescence

(2014) Tomotsugu Koyama   Frontiers in Plant Science

Protein–Protein Interactions in the Regulation of WRKY Transcription Factors

(2013) Yingjun Chi et al.   Molecular Plant

ETHYLENE-INSENSITIVE3 Is a Senescence-Associated Gene That Accelerates Age-Dependent Leaf Senescence by Directly Repressing miR164 Transcription in Arabidopsis

(2013) Z. Li et al.   PLANT CELL

AtWRKY40 and AtWRKY63 Modulate the Expression of Stress-Responsive Nuclear Genes Encoding Mitochondrial and Chloroplast Proteins

(2013) O. Van Aken et al.   PLANT PHYSIOLOGY

A Regulatory Cascade Involving Class II ETHYLENE RESPONSE FACTOR Transcriptional Repressors Operates in the Progression of Leaf Senescence

(2013) T. Koyama et al.   PLANT PHYSIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Linking photoreceptor excitation to changes in plant architecture

(2012) L. Li et al.   GENES & DEVELOPMENT

Gene Overexpression: Uses, Mechanisms, and Interpretation

(2012) G. Prelich   GENETICS

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

Canopy Light and Plant Health

(2012) C. L. Ballare et al.   PLANT PHYSIOLOGY

Microbe-Associated Molecular Patterns-Triggered Root Responses Mediate Beneficial Rhizobacterial Recruitment in Arabidopsis

(2012) V. Lakshmanan et al.   PLANT PHYSIOLOGY

News on ABA transport, protein degradation, and ABFs/WRKYs in ABA signaling

(2011) Regina Antoni et al.   CURRENT OPINION IN PLANT BIOLOGY

WRKY22 transcription factor mediates dark-induced leaf senescence in Arabidopsis

(2011) Xiang Zhou et al.   MOLECULES AND CELLS

Phosphorylation of a WRKY Transcription Factor by Two Pathogen-Responsive MAPKs Drives Phytoalexin Biosynthesis inArabidopsis

(2011) Guohong Mao et al.   PLANT CELL

Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades

(2011) Mercedes M. Keller et al.   PLANT JOURNAL

Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings

(2011) Diederik H. Keuskamp et al.   PLANT JOURNAL

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance

(2011) Shujia Li et al.   PLANTA

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Light signal transduction: an infinite spectrum of possibilities

(2010) Joanne Chory   PLANT JOURNAL

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers

(2009) Patricia Hornitschek et al.   EMBO JOURNAL

Auxin and Ethylene Regulate Elongation Responses to Neighbor Proximity Signals Independent of Gibberellin and DELLA Proteins in Arabidopsis

(2009) R. Pierik et al.   PLANT PHYSIOLOGY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity

(2009) J. E. Moreno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants

(2008) Yi Tao et al.   CELL

Induced Plant Defenses in the Natural Environment: Nicotiana attenuata WRKY3 and WRKY6 Coordinate Responses to Herbivory

(2008) M. Skibbe et al.   PLANT CELL

Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

(2008) Ingo Ciolkowski et al.   PLANT MOLECULAR BIOLOGY