exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicles from human biofluids

Circulating exosomal mRNA profiling identifies novel signatures for the detection of prostate cancer

(2021) Jin Ji et al.   Molecular Cancer

uPAR+ extracellular vesicles: a robust biomarker of resistance to checkpoint inhibitor immunotherapy in metastatic melanoma patients

(2021) Letizia Porcelli et al.   Journal for ImmunoTherapy of Cancer

Using single-vesicle technologies to unravel the heterogeneity of extracellular vesicles

(2021) Guillermo Bordanaba-Florit et al.   Nature Protocols

Five-lncRNA signature in plasma exosomes serves as diagnostic biomarker for esophageal squamous cell carcinoma

(2020) Zichen Jiao et al.   Aging-US

ExoceRNA atlas: A database of cancer ceRNAs in human blood exosomes

(2020) Lei Xu et al.   LIFE SCIENCES

LncExpDB: an expression database of human long non-coding RNAs

(2020) Zhao Li et al.   NUCLEIC ACIDS RESEARCH

The GTEx Consortium atlas of genetic regulatory effects across human tissues

(2020)   SCIENCE

Purification of HCC-specific extracellular vesicles on nanosubstrates for early HCC detection by digital scoring

(2020) Na Sun et al.   Nature Communications

Clinical relevance of extracellular vesicles in hematological neoplasms: from liquid biopsy to cell biopsy

(2020) Stefania Trino et al.   LEUKEMIA

Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas

(2020) Eva Hulstaert et al.   Cell Reports

Extracellular Vesicles Long RNA Sequencing Reveals Abundant mRNA, circRNA, and lncRNA in Human Blood as Potential Biomarkers for Cancer Diagnosis

(2019) Yuchen Li et al.   CLINICAL CHEMISTRY

exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids

(2019) Oscar D. Murillo et al.   CELL

Plasma extracellular vesicle long RNA profiling identifies a diagnostic signature for the detection of pancreatic ductal adenocarcinoma

(2019) Shulin Yu et al.   GUT

Extracellular vesicles as a novel source of biomarkers in liquid biopsies for monitoring cancer progression and drug resistance

(2019) M. Helena Vasconcelos et al.   DRUG RESISTANCE UPDATES

Engineered nanointerfaces for microfluidic isolation and molecular profiling of tumor-specific extracellular vesicles

(2018) Eduardo Reátegui et al.   Nature Communications

Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

(2018) Mohashin Pathan et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes

(2017) Shengli Li et al.   NUCLEIC ACIDS RESEARCH

miRandola 2017: a curated knowledge base of non-invasive biomarkers

(2017) Francesco Russo et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A census of human RNA-binding proteins

(2014) Stefanie Gerstberger et al.   NATURE REVIEWS GENETICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

(2009) David A. Barbie et al.   NATURE