Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

The energy landscape of −1 ribosomal frameshifting

(2020) Junhong Choi et al.   Science Advances

Genome-wide Survey of Ribosome Collision

(2020) Peixun Han et al.   Cell Reports

Disome and Trisome Profiling Reveal Genome-wide Targets of Ribosome Quality Control

(2020) Sezen Meydan et al.   MOLECULAR CELL

Facets of Theiler’s Murine Encephalomyelitis Virus-Induced Diseases: An Update

(2019) Ingo Gerhauser et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress

(2019) Colin Chih-Chien Wu et al.   MOLECULAR CELL

Programmed –1 Ribosome Frameshifting on Viral and Bacterial mRNA s: mechanisms and biomedical implications [Au: OK ?]

(2019) Natalia Korniy et al.   FEBS LETTERS

Comparative analysis of gene expression in virulent and attenuated strains of infectious bronchitis virus at sub-codon resolution

(2019) Adam Dinan et al.   JOURNAL OF VIROLOGY

Programmed −2/−1 Ribosomal Frameshifting in Simarteriviruses: an Evolutionarily Conserved Mechanism

(2019) Yanhua Li et al.   JOURNAL OF VIROLOGY

Characterization of the stimulators of protein-directed ribosomal frameshifting in Theiler's murine encephalomyelitis virus

(2019) Sawsan Napthine et al.   NUCLEIC ACIDS RESEARCH

Ribosome Collisions Result in +1 Frameshifting in the Absence of No-Go Decay

(2019) Carrie L. Simms et al.   Cell Reports

Ribosome collisions alter frameshifting at translational reprogramming motifs in bacterial mRNAs

(2019) Angela M. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamic control of −1 programmed ribosomal frameshifting

(2019) Lars V. Bock et al.   Nature Communications

Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts

(2019) Petr Tesina et al.   EMBO JOURNAL

The extent of ribosome queuing in budding yeast

(2018) Alon Diament et al.   PLoS Computational Biology

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps

(2018) Tristan Ian Croll   Acta Crystallographica Section D-Structural Biology

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

An analysis by metabolic labelling of the encephalomyocarditis virus ribosomal frameshifting efficiency and stimulators

(2017) Roger Ling et al.   JOURNAL OF GENERAL VIROLOGY

Ribosome pausing, arrest and rescue in bacteria and eukaryotes

(2017) Allen R. Buskirk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Protein-directed ribosomal frameshifting temporally regulates gene expression

(2017) Sawsan Napthine et al.   Nature Communications

A novel role for poly(C) binding proteins in programmed ribosomal frameshifting

(2016) Sawsan Napthine et al.   NUCLEIC ACIDS RESEARCH

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

(2016) Marcin Magnus et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling

(2016) Nerea Irigoyen et al.   PLoS Pathogens

Characterization of Ribosomal Frameshifting in Theiler's Murine Encephalomyelitis Virus

(2015) Leanne K. Finch et al.   JOURNAL OF VIROLOGY

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

(2015) Betty Y. Chung et al.   RNA

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast

(2015) Jeffrey A. Hussmann et al.   PLoS Genetics

Programmed –1 Frameshifting by Kinetic Partitioning during Impeded Translocation

(2014) Neva Caliskan et al.   CELL

Dom34 Rescues Ribosomes in 3′ Untranslated Regions

(2014) Nicholas R. Guydosh et al.   CELL

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

(2014) Carlo G. Artieri et al.   GENOME RESEARCH

Transactivation of programmed ribosomal frameshifting by a viral protein

(2014) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

(2014) Liana F Lareau et al.   eLife

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structural basis of Vps33A recruitment to the human HOPS complex by Vps16

(2013) S. C. Graham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Theiler's murine encephalomyelitis virus contrasts with encephalomyocarditis and foot-and-mouth disease viruses in its functional utilization of the StopGo non-standard translation mechanism

(2012) G. Loughran et al.   JOURNAL OF GENERAL VIROLOGY

Non-canonical translation in RNA viruses

(2012) A. E. Firth et al.   JOURNAL OF GENERAL VIROLOGY

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

Linking Crystallographic Model and Data Quality

(2012) P. A. Karplus et al.   SCIENCE

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

mRNA pseudoknot structures can act as ribosomal roadblocks

(2011) Jesper Tholstrup et al.   NUCLEIC ACIDS RESEARCH

Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome

(2011) G. Loughran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Processive Selenocysteine Incorporation during Synthesis of Eukaryotic Selenoproteins

(2010) S.M. Fixsen et al.   JOURNAL OF MOLECULAR BIOLOGY

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Mutational analysis of the EMCV 2A protein identifies a nuclear localization signal and an eIF4E binding site

(2010) Rachel Groppo et al.   VIROLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

xia2: an expert system for macromolecular crystallography data reduction

(2009) G. Winter   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Cardioviruses Are Genetically Diverse and Cause Common Enteric Infections in South Asian Children

(2009) O. Blinkova et al.   JOURNAL OF VIROLOGY

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Phylogenetic Analysis of the Species Theilovirus: Emerging Murine and Human Pathogens

(2008) Z. Liang et al.   JOURNAL OF VIROLOGY

Site-Specific Release of Nascent Chains from Ribosomes at a Sense Codon

(2008) V. A. Doronina et al.   MOLECULAR AND CELLULAR BIOLOGY

Characterization of the termination-reinitiation strategy employed in the expression of influenza B virus BM2 protein

(2008) M. L. Powell et al.   RNA