Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules

Rapid Computational Analysis of DNA Origami Assemblies at Near-Atomic Resolution

(2021) Jae Young Lee et al.   ACS Nano

Programming ultrasensitive threshold response through chemomechanical instability

(2021) Young-Joo Kim et al.   Nature Communications

Configurational Design of Mechanical Perturbation for Fine Control of Twisted DNA Origami Structures

(2019) Young-Joo Kim et al.   ACS Nano

Tailoring the Mechanical Stiffness of DNA Nanostructures Using Engineered Defects

(2019) Chanseok Lee et al.   ACS Nano

Cation-Activated Avidity for Rapid Reconfiguration of DNA Nanodevices

(2018) Alexander E. Marras et al.   ACS Nano

Twisting of DNA Origami from Intercalators

(2017) Reza M. Zadegan et al.   Scientific Reports

Dynamic and Progressive Control of DNA Origami Conformation by Modulating DNA Helicity with Chemical Adducts

(2016) Haorong Chen et al.   ACS Nano

Nanomechanics of Fluorescent DNA Dyes on DNA Investigated by Magnetic Tweezers

(2016) Ying Wang et al.   BIOPHYSICAL JOURNAL

DNA-doxorubicin interaction: New insights and peculiarities

(2016) E. F. Silva et al.   BIOPOLYMERS

Mechanisms of small molecule–DNA interactions probed by single-molecule force spectroscopy

(2016) Ali A. Almaqwashi et al.   NUCLEIC ACIDS RESEARCH

Regulation at a distance of biomolecular interactions using a DNA origami nanoactuator

(2016) Yonggang Ke et al.   Nature Communications

Modulating the Bond Strength of DNA–Nanoparticle Superlattices

(2015) Soyoung E. Seo et al.   ACS Nano

Dynamic Tuning of DNA-Nanoparticle Superlattices by Molecular Intercalation of Double Helix

(2015) Suchetan Pal et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Influence of DNA Binding Dyes on Bare DNA Structure Studied with Atomic Force Microscopy

(2015) Aleksandre Japaridze et al.   MACROMOLECULES

Mechanical design of DNA nanostructures

(2015) Carlos E. Castro et al.   Nanoscale

Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components

(2015) T. Gerling et al.   SCIENCE

Force-dependent persistence length of DNA–intercalator complexes measured in single molecule stretching experiments

(2015) R. F. Bazoni et al.   Soft Matter

DNA Origami as an In Vivo Drug Delivery Vehicle for Cancer Therapy

(2014) Qian Zhang et al.   ACS Nano

Structural DNA Nanotechnology: State of the Art and Future Perspective

(2014) Fei Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Effect of YOYO-1 on the mechanical properties of DNA

(2014) Binu Kundukad et al.   Soft Matter

DNA Interaction with Hoechst 33258: Stretching Experiments Decouple the Different Binding Modes

(2013) E. F. Silva et al.   JOURNAL OF PHYSICAL CHEMISTRY B

DNA-intercalator interactions: structural and physical analysis using atomic force microscopy in solution

(2013) M. Maaloum et al.   Soft Matter

DNA Origami Delivery System for Cancer Therapy with Tunable Release Properties

(2012) Yong-Xing Zhao et al.   ACS Nano

DNA Origami as a Carrier for Circumvention of Drug Resistance

(2012) Qiao Jiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Two design strategies for enhancement of multilayer–DNA-origami folding: underwinding for specific intercalator rescue and staple-break positioning

(2012) Yonggang Ke et al.   Chemical Science

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

(2011) Katarina Hart et al.   Journal of Chemical Theory and Computation

Direct Mechanical Measurements Reveal the Material Properties of Three-Dimensional DNA Origami

(2011) Dominik J. Kauert et al.   NANO LETTERS

A primer to scaffolded DNA origami

(2011) Carlos Ernesto Castro et al.   NATURE METHODS

Atomic force microscopy study of DNA conformation in the presence of drugs

(2010) Valeria Cassina et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Torsional sensing of small-molecule binding using magnetic tweezers

(2010) J. Lipfert et al.   NUCLEIC ACIDS RESEARCH

Mechanical and structural properties of YOYO-1 complexed DNA

(2010) K. Gunther et al.   NUCLEIC ACIDS RESEARCH

Magnetic tweezers measurements of the nanomechanical properties of DNA in the presence of drugs

(2010) D. Salerno et al.   NUCLEIC ACIDS RESEARCH

Force spectroscopy and fluorescence microscopy of dsDNA-YOYO-1 complexes: implications for the structure of dsDNA in the overstretching region

(2010) C. U. Murade et al.   NUCLEIC ACIDS RESEARCH

Multilayer DNA Origami Packed on a Square Lattice

(2009) Yonggang Ke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Folding DNA into Twisted and Curved Nanoscale Shapes

(2009) H. Dietz et al.   SCIENCE