Complex Portal 2022: new curation frontiers

Analysing the yeast complexome—the Complex Portal rising to the challenge

(2021) Birgit H M Meldal et al.   NUCLEIC ACIDS RESEARCH

hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies

(2021) Kevin Drew et al.   Molecular Systems Biology

wwPDB biocuration: on the front line of structural biology

(2021) Jasmine Y. Young et al.   NATURE METHODS

The EcoCyc Database in 2021

(2021) Ingrid M. Keseler et al.   Frontiers in Microbiology

Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes

(2021) Niels Velthuijs et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Wikidata as a knowledge graph for the life sciences

(2020) Andra Waagmeester et al.   eLife

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

(2020) Marek Ostaszewski et al.   Scientific Data

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

(2020) Vasundra Touré et al.   BIOINFORMATICS

The BioGRID database: A comprehensive biomedical resource of curated protein, genetic and chemical interactions

(2020) Rose Oughtred et al.   PROTEIN SCIENCE

WikiPathways: connecting communities

(2020) Marvin Martens et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology resource: enriching a GOld mine

(2020) et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

Open Targets Platform: supporting systematic drug–target identification and prioritisation

(2020) David Ochoa et al.   NUCLEIC ACIDS RESEARCH

Towards a unified open access dataset of molecular interactions

(2020) Pablo Porras et al.   Nature Communications

Integration of macromolecular complex data into the Saccharomyces Genome Database

(2019) Edith D Wong et al.   Database-The Journal of Biological Databases and Curation

Phosphate uptake by the phosphonate transport system PhnCDE

(2019) Raffaele Stasi et al.   BMC MICROBIOLOGY

ComplexBrowser: a tool for identification and quantification of protein complexes in large-scale proteomics datasets

(2019) Wojciech Michalak et al.   MOLECULAR & CELLULAR PROTEOMICS

Ancestral reconstruction of protein interaction networks

(2019) Benjamin J. Liebeskind et al.   PLoS Computational Biology

Lessons from equilibrium statistical physics regarding the assembly of protein complexes

(2019) Pablo Sartori et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions

(2018) M. Sivade et al.   BMC BIOINFORMATICS

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

CORUM: the comprehensive resource of mammalian protein complexes—2019

(2018) Madalina Giurgiu et al.   NUCLEIC ACIDS RESEARCH

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

(2018) Birgit H M Meldal et al.   NUCLEIC ACIDS RESEARCH

Production of Protein-Complex Components Is Stoichiometric and Lacks General Feedback Regulation in Eukaryotes

(2018) James C. Taggart et al.   Cell Systems

ChEBI in 2016: Improved services and an expanding collection of metabolites

(2015) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

Wikidata

(2014) Denny Vrandečić et al.   COMMUNICATIONS OF THE ACM

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

(2010) Martijn P van Iersel et al.   BMC BIOINFORMATICS

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS