Wikidata as a knowledge graph for the life sciences

FAIRsharing as a community approach to standards, repositories and policies

(2019) Susanna-Assunta Sansone et al.   NATURE BIOTECHNOLOGY

Evaluating FAIR maturity through a scalable, automated, community-governed framework

(2019) Mark D. Wilkinson et al.   Scientific Data

A systematic literature review on Wikidata

(2019) Marçal Mora-Cantallops et al.   Data Technologies and Applications

Wikidata: A large-scale collaborative ontological medical database

(2019) Houcemeddine Turki et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration

(2018) Jiwen Xin et al.   BMC BIOINFORMATICS

Harmonising phenomics information for a better interoperability in the rare disease field

(2018) Sylvie Maiella et al.   European Journal of Medical Genetics

Uniform resolution of compact identifiers for biomedical data

(2018) Sarala M. Wimalaratne et al.   Scientific Data

Protein Data Bank: the single global archive for 3D macromolecular structure data

(2018) et al.   NUCLEIC ACIDS RESEARCH

Human Disease Ontology 2018 update: classification, content and workflow expansion

(2018) Lynn M Schriml et al.   NUCLEIC ACIDS RESEARCH

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

(2017) Malachi Griffith et al.   NATURE GENETICS

Database resources of the National Center for Biotechnology Information

(2017) et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

(2017) Denise N Slenter et al.   NUCLEIC ACIDS RESEARCH

The Reactome Pathway Knowledgebase

(2017) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY

(2017) Simon D Harding et al.   NUCLEIC ACIDS RESEARCH

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata

(2017) Tim E. Putman et al.   Database-The Journal of Biological Databases and Curation

The CompTox Chemistry Dashboard: a community data resource for environmental chemistry

(2017) Antony J. Williams et al.   Journal of Cheminformatics

Systematic integration of biomedical knowledge prioritizes drugs for repurposing

(2017) Daniel Scott Himmelstein et al.   eLife

Prospective phenotyping of NGLY1-CDDG, the first congenital disorder of deglycosylation

(2016) Christina Lam et al.   GENETICS IN MEDICINE

SPLASH, a hashed identifier for mass spectra

(2016) Gert Wohlgemuth et al.   NATURE BIOTECHNOLOGY

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

The Human Phenotype Ontology in 2017

(2016) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

(2016) Christopher J. Mungall et al.   NUCLEIC ACIDS RESEARCH

DrugCentral: online drug compendium

(2016) Oleg Ursu et al.   NUCLEIC ACIDS RESEARCH

Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model

(2016) Leonore Reiser et al.   Database-The Journal of Biological Databases and Curation

Wikidata as a semantic framework for the Gene Wiki initiative

(2016) Sebastian Burgstaller-Muehlbacher et al.   Database-The Journal of Biological Databases and Curation

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

NGLY1 mutation causes neuromotor impairment, intellectual disability, and neuropathy

(2015) Ahmet Okay Caglayan et al.   European Journal of Medical Genetics

The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands

(2015) Christopher Southan et al.   NUCLEIC ACIDS RESEARCH

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway

(2014) Gregory M. Enns et al.   GENETICS IN MEDICINE

Standardized description of scientific evidence using the Evidence Ontology (ECO)

(2014) M. C. Chibucos et al.   Database-The Journal of Biological Databases and Curation

The IUPHAR/BPS Guide to PHARMACOLOGY: an expert-driven knowledgebase of drug targets and their ligands

(2013) Adam J. Pawson et al.   NUCLEIC ACIDS RESEARCH

Bayesian ontology querying for accurate and noise-tolerant semantic searches

(2012) S. Bauer et al.   BIOINFORMATICS

Directly e-mailing authors of newly published papers encourages community curation

(2012) Stephanie M. Bunt et al.   Database-The Journal of Biological Databases and Curation

Normalized names for clinical drugs: RxNorm at 6 years

(2011) Stuart J Nelson et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

(2010) Martijn P van Iersel et al.   BMC BIOINFORMATICS

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies

(2009) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The NCI Thesaurus quality assurance life cycle

(2009) Sherri de Coronado et al.   JOURNAL OF BIOMEDICAL INFORMATICS

PubChem: a public information system for analyzing bioactivities of small molecules

(2009) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Models for financial sustainability of biological databases and resources

(2009) C. Chandras et al.   Database-The Journal of Biological Databases and Curation