Developing a Standardized Single Nucleotide Polymorphism Panel for Rangewide Genetic Monitoring of Bull Trout

Genotyping‐in‐Thousands by sequencing reveals marked population structure in Western Rattlesnakes to inform conservation status

(2020) Danielle A. Schmidt et al.   Ecology and Evolution

Comparing inferences derived from microsatellite and RADseq datasets: a case study involving threatened bull trout

(2019) Justin Bohling et al.   CONSERVATION GENETICS

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Parentage‐Based Tagging: Reviewing the Implementation of a New Tool for an Old Problem

(2019) Craig A. Steele et al.   FISHERIES

Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology

(2019) Danielle A. Schmidt et al.   Molecular Ecology Resources

Bayesian inference from the conditional genetic stock identification model

(2018) Benjamin M. Moran et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Long-term population dynamics and conservation risk of migratory bull trout in the upper Columbia River basin

(2018) Ryan P. Kovach et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada

(2018) Terry D. Beacham et al.   Evolutionary Applications

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

(2018) Kris A. Christensen et al.   PLoS One

Climate, invasive species and land use drive population dynamics of a cold-water specialist

(2016) Ryan P. Kovach et al.   JOURNAL OF APPLIED ECOLOGY

Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp,Carassius carassius,L.

(2016) Daniel L. Jeffries et al.   MOLECULAR ECOLOGY

Comparability of genotyping data obtained by different procedures – an inter-laboratory survey

(2016) S. Baric et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Managing hybridization of a recovering endangered species: The red wolfCanis rufusas a case study

(2015) Eric M. Gese et al.   Current Zoology

Managing hybridization of a recovering endangered species: The red wolfCanis rufusas a case study

(2015) Eric M. Gese et al.   Current Zoology

Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey

(2014) Jon E. Hess et al.   Molecular Ecology Resources

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Novel SNP Genotyping Assays Facilitate Species Identification ofSalvelinusCollected in a Recreational Fishery

(2014) Patrick W. DeHaan et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Time-series analysis reveals genetic responses to intensive management of razorback sucker (Xyrauchen texanus)

(2013) Thomas E. Dowling et al.   Evolutionary Applications

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Spawning Success of Bull Trout Transported above Main-Stem Clark Fork River Dams in Idaho and Montana

(2013) Patrick W. DeHaan et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

The sexually dimorphic on the Y-chromosome gene (sdY) is a conserved male-specific Y-chromosome sequence in many salmonids

(2012) Ayaka Yano et al.   Evolutionary Applications

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Use of genetic markers to aid in re-establishing migratory connectivity in a fragmented metapopulation of bull trout (Salvelinus confluentus)

(2011) Patrick W. DeHaan et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.)

(2011) J. S. Ellis et al.   GENETICA

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Genetic Structure, Evolutionary History, and Conservation Units of Bull Trout in the Coterminous United States

(2011) William R. Ardren et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Conservation genetics in transition to conservation genomics

(2010) N. Joop Ouborg et al.   TRENDS IN GENETICS

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

Microsatellite DNA analysis of success in conserving genetic diversity after 33 years of refuge management for the desert pupfish complex

(2008) H. Koike et al.   ANIMAL CONSERVATION

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

An improved method for predicting the accuracy of genetic stock identification

(2008) Eric C. Anderson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A centralized model for creating shared, standardized, microsatellite data that simplifies inter-laboratory collaboration

(2008) Jeff J. Stephenson et al.   CONSERVATION GENETICS

Advances in molecular technology and their impact on fisheries genetics

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One