DeepImageJ: A user-friendly environment to run deep learning models in ImageJ

Quantitative digital microscopy with deep learning

(2021) Benjamin Midtvedt et al.   Applied Physics Reviews

Open-source deep-learning software for bioimage segmentation

(2021) Alice M. Lucas et al.   MOLECULAR BIOLOGY OF THE CELL

Democratising deep learning for microscopy with ZeroCostDL4Mic

(2021) Lucas von Chamier et al.   Nature Communications

Cryo-electron Tomography Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration

(2020) Florian Fäßler et al.   MICROSCOPY AND MICROANALYSIS

A Bird’s-Eye View of Deep Learning in Bioimage Analysis

(2020) Erik Meijering   Computational and Structural Biotechnology Journal

The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis

(2020) Alexandra B. Schroeder et al.   PROTEIN SCIENCE

Virtual histological staining of unlabelled tissue-autofluorescence images via deep learning

(2019) Yair Rivenson et al.   Nature Biomedical Engineering

DeepClas4Bio: Connecting bioimaging tools with deep learning frameworks for image classification

(2019) A. Inés et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Deep learning for cellular image analysis

(2019) Erick Moen et al.   NATURE METHODS

ilastik: interactive machine learning for (bio)image analysis

(2019) Stuart Berg et al.   NATURE METHODS

ImJoy: an open-source computational platform for the deep learning era

(2019) Wei Ouyang et al.   NATURE METHODS

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

(2019) Juan C. Caicedo et al.   NATURE METHODS

Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

(2019) Estibaliz Gómez-de-Mariscal et al.   Scientific Reports

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Content-aware image restoration: pushing the limits of fluorescence microscopy

(2018) Martin Weigert et al.   NATURE METHODS

U-Net: deep learning for cell counting, detection, and morphometry

(2018) Thorsten Falk et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS