Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Robust decomposition of cell type mixtures in spatial transcriptomics

(2021) Dylan M. Cable et al.   NATURE BIOTECHNOLOGY

Menstrual flow as a non-invasive source of endometrial organoids

(2021) Tereza Cindrova-Davies et al.   Communications Biology

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution

(2020) Alyssa J. Miller et al.   DEVELOPMENTAL CELL

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

(2020) Mirjana Efremova et al.   Nature Protocols

Physiology of the endometrium and regulation of menstruation.

(2020) Hilary OD Critchley et al.   PHYSIOLOGICAL REVIEWS

Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes

(2020) Haynes Heaton et al.   NATURE METHODS

Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours

(2020) Dawn R. Cochrane et al.   JOURNAL OF PATHOLOGY

Steroid hormones regulate genome-wide epigenetic programming and gene transcription in human endometrial cells with marked aberrancies in endometriosis

(2020) Sahar Houshdaran et al.   PLoS Genetics

Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle

(2020) Wanxin Wang et al.   NATURE MEDICINE

A relational database to identify differentially expressed genes in the endometrium and endometriosis lesions

(2020) Michael Gabriel et al.   Scientific Data

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography

(2020) Alma Andersson et al.   Communications Biology

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

(2020) Robert R. Stickels et al.   NATURE BIOTECHNOLOGY

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution

(2019) Samuel G. Rodriques et al.   SCIENCE

Characterization of cell fate probabilities in single-cell data with Palantir

(2019) Manu Setty et al.   NATURE BIOTECHNOLOGY

A single-cell molecular map of mouse gastrulation and early organogenesis

(2019) Blanca Pijuan-Sala et al.   NATURE

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

(2019) Samuel L. Wolock et al.   Cell Systems

Evidence for shared molecular pathways of dysregulated decidualization in preeclampsia and endometrial disorders revealed by microarray data integration

(2019) Maria Belen Rabaglino et al.   FASEB JOURNAL

Benchmark and integration of resources for the estimation of human transcription factor activities

(2019) Luz Garcia-Alonso et al.   GENOME RESEARCH

Patient-derived organoids from endometrial disease capture clinical heterogeneity and are amenable to drug screening

(2019) Matteo Boretto et al.   NATURE CELL BIOLOGY

High-definition spatial transcriptomics for in situ tissue profiling

(2019) Sanja Vickovic et al.   NATURE METHODS

Decoding human fetal liver haematopoiesis

(2019) Dorin-Mirel Popescu et al.   NATURE

Self-renewing endometrial epithelial organoids of the human uterus

(2019) Harriet C. Fitzgerald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does human endometrial LGR5 gene expression suggest the existence of another hormonally regulated epithelial stem cell niche?

(2018) N Tempest et al.   HUMAN REPRODUCTION

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Abnormally located SSEA1+/SOX9+ endometrial epithelial cells with a basalis-like phenotype in the eutopic functionalis layer may play a role in the pathogenesis of endometriosis

(2018) D K Hapangama et al.   HUMAN REPRODUCTION

Single-cell reconstruction of the early maternal–fetal interface in humans

(2018) Roser Vento-Tormo et al.   NATURE

Deep generative modeling for single-cell transcriptomics

(2018) Romain Lopez et al.   NATURE METHODS

The Use of Endometrial Cancer Patient–Derived Organoid Culture for Drug Sensitivity Testing Is Feasible

(2017) Eugenia Girda et al.   INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER

Early commitment and robust differentiation in colonic crypts

(2017) Beáta Tóth et al.   Molecular Systems Biology

The Human Cell Atlas: from vision to reality

(2017) Orit Rozenblatt-Rosen et al.   NATURE

Long-term, hormone-responsive organoid cultures of human endometrium in a chemically defined medium

(2017) Margherita Y. Turco et al.   NATURE CELL BIOLOGY

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions

(2017) Heonjong Han et al.   NUCLEIC ACIDS RESEARCH

Defective decidualization during and after severe preeclampsia reveals a possible maternal contribution to the etiology

(2017) Tamara Garrido-Gomez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells

(2016) Gioele La Manno et al.   CELL

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

(2016) Mariano J Alvarez et al.   NATURE GENETICS

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

(2016) Suguna Rani Krishnaswami et al.   Nature Protocols

Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system

(2016) S. Marques et al.   SCIENCE

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Lgr5 marks stem/progenitor cells in ovary and tubal epithelia

(2014) Annie Ng et al.   NATURE CELL BIOLOGY

Integrated genomic characterization of endometrial carcinoma

(2013) Gad Getz et al.   NATURE

Lgr5+ve Stem/Progenitor Cells Contribute to Nephron Formation during Kidney Development

(2012) Nick Barker et al.   Cell Reports

The evolution of menstruation: A new model for genetic assimilation

(2011) Deena Emera et al.   BIOESSAYS

Deregulation of the serum- and glucocorticoid-inducible kinase SGK1 in the endometrium causes reproductive failure

(2011) Madhuri S Salker et al.   NATURE MEDICINE

Lgr5+ve Stem Cells Drive Self-Renewal in the Stomach and Build Long-Lived Gastric Units In Vitro

(2010) Nick Barker et al.   Cell Stem Cell

A role for menstruation in preconditioning the uterus for successful pregnancy

(2009) Jan J. Brosens et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Progesterone Inhibition of Wnt/ -Catenin Signaling in Normal Endometrium and Endometrial Cancer

(2009) Y. Wang et al.   CLINICAL CANCER RESEARCH

Lgr5 marks cycling, yet long-lived, hair follicle stem cells

(2008) Viljar Jaks et al.   NATURE GENETICS