Strong primer bias for Tulasnellaceae fungi in metabarcoding: Specific primers improve the characterization of the mycorrhizal communities of epiphytic orchids

The endangered epiphytic orchid Dendrobium okinawense has a highly specific mycorrhizal association with a single Tulasnellaceae fungus

(2021) Kento Rammitsu et al.   Journal of Forest Research

Diversity of mycorrhizal Tulasnella associated with epiphytic and rupicolous orchids from the Brazilian Atlantic Forest, including four new species

(2020) Emiliane Fernanda Silva Freitas et al.   Scientific Reports

The Architecture of the Network of Orchid–Fungus Interactions in Nine Co-occurring Dendrobium Species

(2020) Xiaoke Xing et al.   Frontiers in Ecology and Evolution

The mycorrhizal community of the epiphytic orchid Thrixspermum japonicum is strongly biased toward a single Ceratobasidiaceae fungus, despite a wide range of fungal partners

(2020) Kento Rammitsu et al.   AMERICAN JOURNAL OF BOTANY

The impact of life form on the architecture of orchid mycorrhizal networks in tropical forest

(2019) Xiaoke Xing et al.   OIKOS

Latitudinal variation in mycorrhizal diversity associated with a European orchid

(2019) Karl J. Duffy et al.   JOURNAL OF BIOGEOGRAPHY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Availability of orchid mycorrhizal fungi on roadside trees in a tropical urban landscape

(2019) Muhammad Izuddin et al.   Scientific Reports

Generalism in the interaction of Tulasnellaceae mycobionts with orchids characterizes a biodiversity hotspot in the tropical Andes of Southern Ecuador

(2018) Paulo Herrera et al.   MYCOSCIENCE

In situ Orchid Seedling-Trap Experiment Shows Few Keystone and Many Randomly Associated Mycorrhizal Fungal Species During Early Plant Colonization

(2018) Stefania Cevallos et al.   Frontiers in Plant Science

Many broadly-shared mycobionts characterize mycorrhizal interactions of two coexisting epiphytic orchids in a high elevation tropical forest

(2018) Paulo Herrera et al.   Fungal Ecology

Mycorrhizal specificity does not limit the distribution of an endangered orchid species

(2017) Michael Waud et al.   MOLECULAR ECOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are there keystone mycorrhizal fungi associated to tropical epiphytic orchids?

(2016) Stefania Cevallos et al.   MYCORRHIZA

Impact of primer choice on characterization of orchid mycorrhizal communities using 454 pyrosequencing

(2014) Michael Waud et al.   Molecular Ecology Resources

Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing

(2014) Jane Oja et al.   NEW PHYTOLOGIST

Mycorrhizal preferences and fine spatial structure of the epiphytic orchid Epidendrum rhopalostele

(2013) María L. Riofrío et al.   AMERICAN JOURNAL OF BOTANY

The systematic distribution of vascular epiphytes - a critical update

(2013) Gerhard Zotz   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Highly diverse and spatially heterogeneous mycorrhizal symbiosis in a rare epiphyte is unrelated to broad biogeographic or environmental features

(2013) Tyler R. Kartzinel et al.   MOLECULAR ECOLOGY

Shifts in mycorrhizal fungi during the evolution of autotrophy to mycoheterotrophy in Cymbidium (Orchidaceae)

(2012) Y. Ogura-Tsujita et al.   AMERICAN JOURNAL OF BOTANY

The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids

(2012) FLORENT MARTOS et al.   MOLECULAR ECOLOGY

Rapid and simple preparation of mushroom DNA directly from colonies and fruiting bodies for PCR

(2012) Kosuke Izumitsu et al.   MYCOSCIENCE

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Photosynthetic Mediterranean meadow orchids feature partial mycoheterotrophy and specific mycorrhizal associations

(2011) Mariangela Girlanda et al.   AMERICAN JOURNAL OF BOTANY

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining species in Tulasnella by correlating morphology and nrDNA ITS-5.8S sequence data of basidiomata from a tropical Andean forest

(2010) Darío Cruz et al.   MYCOLOGICAL PROGRESS

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Mycorrhizal diversity in Apostasia (Orchidaceae) indicates the origin and evolution of orchid mycorrhiza

(2009) Tomohisa Yukawa et al.   AMERICAN JOURNAL OF BOTANY

Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills

(2008) Richard P. Shefferson et al.   AMERICAN JOURNAL OF BOTANY

Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas

(2008) D. Lee Taylor et al.   NEW PHYTOLOGIST