Challenges in estimating numbers of vectors integrated in gene-modified cells using DNA sequence information

Long-term Outcomes after Gene Therapy for Adenosine Deaminase Severe Combined Immune Deficiency (ADA SCID)

(2021) Bryanna C. Reinhardt et al.   BLOOD

Clonal tracking in gene therapy patients reveals a diversity of human hematopoietic differentiation programs

(2020) Emmanuelle Six et al.   BLOOD

A long-term study of AAV gene therapy in dogs with hemophilia A identifies clonal expansions of transduced liver cells

(2020) Giang N. Nguyen et al.   NATURE BIOTECHNOLOGY

Variation in proviral content among human genomes mediated by LTR recombination

(2018) Jainy Thomas et al.   Mobile DNA

GENE-IS: Time-Efficient and Accurate Analysis of Viral Integration Events in Large-Scale Gene Therapy Data

(2017) Saira Afzal et al.   Molecular Therapy-Nucleic Acids

INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes

(2017) Eric Sherman et al.   Molecular Therapy-Methods & Clinical Development

INSPIIRED: Quantification and Visualization Tools for Analyzing Integration Site Distributions

(2017) Charles C. Berry et al.   Molecular Therapy-Methods & Clinical Development

Estimating and comparing microbial diversity in the presence of sequencing errors

(2016) Chun-Huo Chiu et al.   PeerJ

Estimating the Number of Species in Microbial Diversity Studies

(2013) John Bunge et al.   Annual Review of Statistics and Its Application

Estimating abundances of retroviral insertion sites from DNA fragment length data

(2012) Charles C. Berry et al.   BIOINFORMATICS

Bioinformatic Clonality Analysis of Next-Generation Sequencing-Derived Viral Vector Integration Sites

(2012) Anne Arens et al.   Human Gene Therapy Methods