Estimating and comparing microbial diversity in the presence of sequencing errors

Estimating diversity via frequency ratios

(2015) Amy Willis et al.   BIOMETRICS

Estimating diversity and entropy profiles via discovery rates of new species

(2015) Anne Chao et al.   Methods in Ecology and Evolution

Unifying Species Diversity, Phylogenetic Diversity, Functional Diversity, and Related Similarity and Differentiation Measures Through Hill Numbers

(2014) Anne Chao et al.   Annual Review of Ecology Evolution and Systematics

An improved nonparametric lower bound of species richness via a modified good-turing frequency formula

(2014) Chun-Huo Chiu et al.   BIOMETRICS

Only Simpson Diversity can be Estimated Accurately from Microbial Community Fingerprints

(2014) Bart Haegeman et al.   MICROBIAL ECOLOGY

Rarefaction and extrapolation of phylogenetic diversity

(2014) Anne Chao et al.   Methods in Ecology and Evolution

Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains

(2013) Hannah M Doll et al.   BMC MICROBIOLOGY

Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies

(2013) Anne Chao et al.   ECOLOGICAL MONOGRAPHS

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

Entropy and the species accumulation curve: a novel entropy estimator via discovery rates of new species

(2013) Anne Chao et al.   Methods in Ecology and Evolution

Estimating the Number of Species in Microbial Diversity Studies

(2013) John Bunge et al.   Annual Review of Statistics and Its Application

Estimation of viral richness from shotgun metagenomes using a frequency count approach

(2013) Heather K Allen et al.   Microbiome

Estimating population diversity with CatchAll

(2012) J. Bunge et al.   BIOINFORMATICS

Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size

(2012) Anne Chao et al.   ECOLOGY

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes

(2011) H. K. Allen et al.   mBio

Partitioning diversity1

(2010) Aaron M. Ellison   ECOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Insidious effects of sequencing errors on perceived diversity in molecular surveys

(2010) Ian A. Dickie   NEW PHYTOLOGIST

Phylogenetic diversity measures based on Hill numbers

(2010) A. Chao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

The core gut microbiome, energy balance and obesity

(2009) Peter J. Turnbaugh et al.   JOURNAL OF PHYSIOLOGY-LONDON

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

(2008) Patrick D Schloss et al.   BMC BIOINFORMATICS

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

DNA reassociation kinetics and diversity indices: richness is not rich enough

(2008) Bart Haegeman et al.   OIKOS

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA