The Complex History of Genome Duplication and Hybridization in North American Gray Treefrogs

Variation in heteroploid reproduction and gene flow across a polyploid complex: One size does not fit all

(2021) Brittany L. Sutherland et al.   Ecology and Evolution

Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

(2020) Polina Yu. Novikova et al.   PLoS Genetics

Revisiting the evolution of the North American tetraploid treefrog (Hyla versicolor)

(2020) James P. Bogart et al.   GENOME

One thousand plant transcriptomes and the phylogenomics of green plants

(2019)   NATURE

Naturally occurring triploids in contact zones between diploid/tetraploid Odontophrynus cordobae and O. americanus (Anura, Odontophrynidae)

(2018) Pablo Grenat et al.   AMPHIBIA-REPTILIA

nQuire: a statistical framework for ploidy estimation using next generation sequencing

(2018) Clemens L. Weiß et al.   BMC BIOINFORMATICS

Phylogenomic support for evolutionary relationships of New World direct-developing frogs (Anura: Terraranae)

(2018) Matthew P. Heinicke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multiple large-scale gene and genome duplications during the evolution of hexapods

(2018) Zheng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted Sampling and Target Capture: Assessing Phylogeographic Concordance with Genome-wide Data

(2018) Lisa N. Barrow et al.   SYSTEMATIC BIOLOGY

Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy

(2018) Paul D. Blischak et al.   Annual Review of Ecology Evolution and Systematics

Evaluating hypotheses of expansion from refugia through comparative phylogeography of south-eastern Coastal Plain amphibians

(2017) Lisa N. Barrow et al.   JOURNAL OF BIOGEOGRAPHY

Extensive recent secondary contacts between four European white oak species

(2017) Thibault Leroy et al.   NEW PHYTOLOGIST

Polyploidy: Pitfalls and paths to a paradigm

(2016) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Integrating phylogenomic and morphological data to assess candidate species-delimitation models in brown and red-bellied snakes (Storeria)

(2016) R. Alexander Pyron et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogenetics, classification, and biogeography of the treefrogs (Amphibia: Anura: Arboranae)

(2016) WILLIAM E. DUELLMAN et al.   ZOOTAXA

Single Geographic Origin of a Widespread Autotetraploid Arabidopsis arenosa Lineage Followed by Interploidy Admixture

(2015) Brian Arnold et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring the mode of origin of polyploid species from next-generation sequence data

(2015) Camille Roux et al.   MOLECULAR ECOLOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Ancient divergence and recent population expansion in a leaf frog endemic to the southern Brazilian Atlantic forest

(2015) Tuliana O. Brunes et al.   ORGANISMS DIVERSITY & EVOLUTION

The polyploidy revolution then...and now: Stebbins revisited

(2014) D. E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in aMytilushybrid zone

(2014) C. Roux et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Genetic and Genomic Interactions of Animals with Different Ploidy Levels

(2013) J.P. Bogart et al.   CYTOGENETIC AND GENOME RESEARCH

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools

(2013) France Dufresne et al.   MOLECULAR ECOLOGY

Coalescent-Based Analysis Distinguishes between Allo- and Autopolyploid Origin in Shepherd's Purse (Capsella bursa-pastoris)

(2012) K. R. St. Onge et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Genetic Adaptation Associated with Genome-Doubling in Autotetraploid Arabidopsis arenosa

(2012) Jesse D. Hollister et al.   PLoS Genetics

Genome duplication in amphibians and fish: an extended synthesis

(2011) B. K. Mable et al.   JOURNAL OF ZOOLOGY

Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?

(2011) Camille Roux et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

Gene and species trees of a Neotropical group of treefrogs: Genetic diversification in the Brazilian Atlantic Forest and the origin of a polyploid species

(2010) Tuliana O. Brunes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

A VERTEBRATE REPRODUCTIVE SYSTEM INVOLVING THREE PLOIDY LEVELS: HYBRID ORIGIN OF TRIPLOIDS IN A CONTACT ZONE OF DIPLOID AND TETRAPLOID PALEARCTIC GREEN TOADS (BUFO VIRIDIS SUBGROUP)*

(2009) Matthias Stöck et al.   EVOLUTION

Historical Divergence and Gene Flow in the Genus Zea

(2009) J. Ross-Ibarra et al.   GENETICS

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana)

(2008) Ben et al.   Frontiers in Bioscience-Landmark

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One