Why Environmental Biomarkers Work: Transcriptome–Proteome Correlations and Modeling of Multistressor Experiments in the Marine Bacterium Trichodesmium

Metagenomic analysis reveals global-scale patterns of ocean nutrient limitation

(2021) Lucas J. Ustick et al.   SCIENCE

Iron uptake proteins in algae and the role of Iron Starvation-Induced Proteins (ISIPs)

(2020) Joerg Behnke et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Minimal cobalt metabolism in the marine cyanobacteriumProchlorococcus

(2020) Nicholas J. Hawco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of an Ocean Protein Portal for Interactive Discovery and Education

(2020) Mak A. Saito et al.   JOURNAL OF PROTEOME RESEARCH

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum

(2019) Kyle R. Frischkorn et al.   Frontiers in Microbiology

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

(2019) Mak A. Saito et al.   JOURNAL OF PROTEOME RESEARCH

Use of the high‐affinity phosphate transporter gene, pstS , as an indicator for phosphorus stress in the marine diazotroph Crocosphaera watsonii ( Chroococcales , Cyanobacteria )

(2019) Nicole Pereira et al.   JOURNAL OF PHYCOLOGY

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms

(2018) Jeffrey B. McQuaid et al.   NATURE

Microorganisms and ocean global change

(2017) David A. Hutchins et al.   Nature Microbiology

Molecular and physiological evidence of genetic assimilation to high CO2in the marine nitrogen fixerTrichodesmium

(2016) Nathan G. Walworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean

(2016) Nathan G. Walworth et al.   Nature Communications

Marine phytoplankton and the changing ocean iron cycle

(2016) D. A. Hutchins et al.   Nature Climate Change

Methionine synthase interreplacement in diatom cultures and communities: Implications for the persistence of B12use by eukaryotic phytoplankton

(2016) Erin M. Bertrand et al.   LIMNOLOGY AND OCEANOGRAPHY

A Novel Protein, Ubiquitous in Marine Phytoplankton, Concentrates Iron at the Cell Surface and Facilitates Uptake

(2015) Joe Morrissey et al.   CURRENT BIOLOGY

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Needles in the blue sea: Sub-species specificity in targeted protein biomarker analyses within the vast oceanic microbial metaproteome

(2015) Mak A. Saito et al.   PROTEOMICS

The global ocean microbiome

(2015) M. A. Moran   SCIENCE

Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide

(2015) David A. Hutchins et al.   Nature Communications

Exact and Asymptotic Weighted Logrank Tests for Interval Censored Data: TheintervalRPackage

(2015) Michael P. Fay et al.   Journal of Statistical Software

Iron deficiency increases growth and nitrogen-fixation rates of phosphorus-deficient marine cyanobacteria

(2014) Nathan S Garcia et al.   ISME Journal

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

(2014) Chris L Dupont et al.   ISME Journal

Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers

(2014) M. A. Saito et al.   SCIENCE

Proteomic and Transcriptomic Analyses of "Candidatus Pelagibacter ubique" Describe the First PII-Independent Response to Nitrogen Limitation in a Free-Living Alphaproteobacterium

(2013) D. P. Smith et al.   mBio

Molecular evidence of iron limitation and availability in the global diazotroph Trichodesmium

(2012) Phoebe Dreux Chappell et al.   ISME Journal

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response

(2012) Sonya T. Dyhrman et al.   PLoS One

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein

(2012) E. M. Bertrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation

(2012) D. M. Karl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iron Utilization in Marine Cyanobacteria and Eukaryotic Algae

(2012) Joe Morrissey et al.   Frontiers in Microbiology

Emerging patterns of marine nitrogen fixation

(2011) Jill A. Sohm et al.   NATURE REVIEWS MICROBIOLOGY

Nutrient Cycles and Marine Microbes in a CO2-Enriched Ocean

(2011) David Hutchins et al.   OCEANOGRAPHY

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens

(2011) Louie L. Wurch et al.   PLoS One

Iron conservation by reduction of metalloenzyme inventories in the marine diazotroph Crocosphaera watsonii

(2011) M. A. Saito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen fixation by marine cyanobacteria

(2011) Jonathan P. Zehr   TRENDS IN MICROBIOLOGY

Transcriptional and Translational Regulatory Responses to Iron Limitation in the Globally Distributed Marine Bacterium Candidatus Pelagibacter ubique

(2010) Daniel P. Smith et al.   PLoS One

The Influence of pCO2 and Temperature on Gene Expression of Carbon and Nitrogen Pathways in Trichodesmium IMS101

(2010) Orly Levitan et al.   PLoS One

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Molecular analysis of the phosphorus starvation response inTrichodesmiumspp.

(2009) Elizabeth D. Orchard et al.   ENVIRONMENTAL MICROBIOLOGY

Diel rhythm of nitrogen and carbon metabolism in the unicellular, diazotrophic cyanobacteriumCrocosphaera watsoniiWH8501

(2009) Wiebke Mohr et al.   ENVIRONMENTAL MICROBIOLOGY

A molecular assessment of the iron stress response in the two phylogenetic clades ofTrichodesmium

(2009) P. Dreux Chappell et al.   ENVIRONMENTAL MICROBIOLOGY

Proteomic Analysis of Stationary Phase in the Marine Bacterium "Candidatus Pelagibacter ubique"

(2008) S. M. Sowell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY