Proteomic and Transcriptomic Analyses of "Candidatus Pelagibacter ubique" Describe the First PII-Independent Response to Nitrogen Limitation in a Free-Living Alphaproteobacterium

Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems

(2012) Tony Romeo et al.   ENVIRONMENTAL MICROBIOLOGY

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

(2012) J. Grote et al.   mBio

Global Transcriptomic and Proteomic Responses of Dehalococcoides ethenogenes Strain 195 to Fixed Nitrogen Limitation

(2011) Patrick K. H. Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nutrient co-limitation of primary producer communities

(2011) W. Stanley Harpole et al.   ECOLOGY LETTERS

The significance of nitrogen cost minimization in proteomes of marine microorganisms

(2011) Joseph J Grzymski et al.   ISME Journal

Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor

(2011) D. Sassera et al.   MOLECULAR BIOLOGY AND EVOLUTION

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria

(2011) Jing Sun et al.   PLoS One

Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase

(2011) Y. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial aptamers that selectively bind glutamine

(2011) Tyler D. Ames et al.   RNA Biology

Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade

(2011) J. Cameron Thrash et al.   Scientific Reports

Nitrogen versus phosphorus limitation in a subtropical coastal embayment (Moreton Bay; Australia): Implications for management

(2010) Fred Wulff et al.   ECOLOGICAL MODELLING

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

(2010) Sarah M Sowell et al.   ISME Journal

The frequency and magnitude of non-additive responses to multiple nutrient enrichment

(2010) Jacob E. Allgeier et al.   JOURNAL OF APPLIED ECOLOGY

Nutrient limitation of picophytoplankton photosynthesis and growth in the tropical North Atlantic

(2010) Margaret Davey et al.   LIMNOLOGY AND OCEANOGRAPHY

How Prochlorococcus bacteria use nitrogen sparingly in their proteins

(2010) JASON G. BRAGG   MOLECULAR ECOLOGY

Contrasting mechanisms of proteomic nitrogen thrift in Prochlorococcus

(2010) JAMES D. J. GILBERT et al.   MOLECULAR ECOLOGY

Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens

(2010) Toshiyuki Ueki et al.   NUCLEIC ACIDS RESEARCH

Does Liebig's law of the minimum scale up from species to communities?

(2010) Michael Danger et al.   OIKOS

Transcriptional and Translational Regulatory Responses to Iron Limitation in the Globally Distributed Marine Bacterium Candidatus Pelagibacter ubique

(2010) Daniel P. Smith et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

(2009) Michelle M Meyer et al.   BMC GENOMICS

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

(2009) Sasha G Tetu et al.   ISME Journal

NtrC-Dependent Regulatory Network for Nitrogen Assimilation in Pseudomonas putida

(2009) A. B. Hervas et al.   JOURNAL OF BACTERIOLOGY

A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

(2009) E. Poiata et al.   RNA

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Resource Patch Formation and Exploitation throughout the Marine Microbial Food Web

(2008) J. R. Seymour et al.   AMERICAN NATURALIST

Association between the availability of environmental resources and the atomic composition of organismal proteomes: Evidence from Prochlorococcus strains living at different depths

(2008) Jie Lv et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11

(2008) H. James Tripp et al.   ENVIRONMENTAL MICROBIOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Dissection of Ammonium Uptake Systems in Corynebacterium glutamicum: Mechanism of Action and Energetics of AmtA and AmtB

(2008) B. Walter et al.   JOURNAL OF BACTERIOLOGY

The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

(2008) Claudia Steglich et al.   PLoS Genetics

Fully Automated Four-Column Capillary LC−MS System for Maximizing Throughput in Proteomic Analyses

(2007) Eric A. Livesay et al.   ANALYTICAL CHEMISTRY