Chilling tolerance in rice: Past and present

A route to de novo domestication of wild allotetraploid rice

(2021) Hong Yu et al.   CELL

OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice

(2021) Zhitao Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification of Candidate Genes Conferring Cold Tolerance to Rice (Oryza sativa L.) at the Bud-Bursting Stage Using Bulk Segregant Analysis Sequencing and Linkage Mapping

(2021) Luomiao Yang et al.   Frontiers in Plant Science

Integrated global analysis reveals a vitamin E-vitamin K1 sub-network, downstream of COLD1, underlying rice chilling tolerance divergence

(2021) Wei Luo et al.   Cell Reports

Hot to touch: the story of the 2021 Nobel Prize in Physiology or Medicine

(2021) Darren W. Logan   Disease Models & Mechanisms

Genetic Dissection of Germinability under Low Temperature by Building a Resequencing Linkage Map in japonica Rice

(2020) Shukun Jiang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of main-effect quantitative trait loci (QTLs) for low-temperature stress tolerance germination- and early seedling vigor-related traits in rice (Oryza sativa L.)

(2020) S. Najeeb et al.   MOLECULAR BREEDING

Salicylic Acid Steers the Growth–Immunity Tradeoff

(2020) Tijmen van Butselaar et al.   TRENDS IN PLANT SCIENCE

The alcohol dehydrogenase gene family in sugarcane and its involvement in cold stress regulation

(2020) Weihua Su et al.   BMC GENOMICS

Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice

(2020) Haifeng Guo et al.   PLANT BIOTECHNOLOGY JOURNAL

CYCLIC NUCLEOTIDE-GATED ION CHANNELs 14 and 16 Promote Tolerance to Heat and Chilling in Rice

(2020) Yongmei Cui et al.   PLANT PHYSIOLOGY

WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice

(2020) Xingjie Zhu et al.   Rice

Genome‐wide lncRNAs identification and association analysis for cold‐responsive genes at the booting stage in rice ( Oryza sativa L.)

(2020) Yue Leng et al.   Plant Genome

ζ-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid

(2020) Xue Liu et al.   Molecular Plant

Whole-genome mining of abiotic stress gene loci in rice

(2020) Luomiao Yang et al.   PLANTA

Multiple Cold Tolerance Trait Phenotyping Reveals Shared Quantitative Trait Loci in Oryza sativa

(2020) Naoki Shimoyama et al.   Rice

Development of Chromosome Segment Substitution Lines (CSSLs) Derived from Guangxi Wild Rice (Oryza rufipogon Griff.) under Rice (Oryza sativa L.) Background and the Identification of QTLs for Plant Architecture, Agronomic Traits and Cold Tolerance

(2020) Ruizhi Yuan et al.   Genes

Transcriptional activation and phosphorylation of OsCNGC9 confer enhanced chilling tolerance in rice

(2020) Jiachang Wang et al.   Molecular Plant

Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice

(2020) Changxuan Xia et al.   PLANT CELL AND ENVIRONMENT

Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate

(2019) Donghai Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OsCIPK7 point‐mutation leads to conformation and kinase‐activity change for sensing cold responsew

(2019) Dajian Zhang et al.   Journal of Integrative Plant Biology

Crop Improvement Through Temperature Resilience

(2019) Jingyu Zhang et al.   Annual Review of Plant Biology

A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice

(2019) Xiaolong Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biosynthesis of DHGA12 and its roles in Arabidopsis seedling establishment

(2019) Hao Liu et al.   Nature Communications

Coordination of light, circadian clock with temperature: the potential mechanisms regulating chilling tolerance in rice

(2019) Xuedan Lu et al.   Journal of Integrative Plant Biology

Cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes

(2019) Gabriela Moraes de Freitas et al.   PLoS One

A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice

(2019) Peng Wang et al.   Scientific Reports

Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

(2019) Sharat Kumar Pradhan et al.   BMC PLANT BIOLOGY

Engineering trehalose biosynthesis pathway improves yield potential in rice under drought, saline and sodic conditions

(2019) Rohit Joshi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cyclophilin OsCYP20‐2 with a novel variant integrates defense and cell elongation for chilling response in rice

(2019) Qiang Ge et al.   NEW PHYTOLOGIST

Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice

(2019) Trung Viet Hoang et al.   PLANT SCIENCE

The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice

(2018) Yu Liu et al.   Journal of Integrative Plant Biology

Insights into the regulation of C-repeat binding factors in plant cold signaling

(2018) Jingyan Liu et al.   Journal of Integrative Plant Biology

OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice

(2018) Liping Chen et al.   NEW PHYTOLOGIST

Genome-wide association study of cold tolerance of Chinese indica rice varieties at the bud burst stage

(2018) Mengchen Zhang et al.   PLANT CELL REPORTS

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

(2018) Jian Sun et al.   Rice

Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing

(2018) Jiayu Song et al.   Frontiers in Plant Science

Locating QTLs controlling overwintering seedling rate in perennial glutinous rice 89-1 (Oryza sativa L.)

(2018) Xiaoshu Deng et al.   Genes & Genomics

QTL and QTL networks for cold tolerance at the reproductive stage detected using selective introgression in rice

(2018) Yuntao Liang et al.   PLoS One

Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates

(2018) Citao Liu et al.   Nature Communications

Crop-model assisted phenomics and genome-wide association study for climate adaptation of indica rice. 1. Phenology

(2017) Michael Dingkuhn et al.   JOURNAL OF EXPERIMENTAL BOTANY

Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9

(2017) Xiangbing Meng et al.   Molecular Plant

A novel functional gene associated with cold tolerance at the seedling stage in rice

(2017) Junliang Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β -Amylase Expression

(2017) Yan Lv et al.   PLANT PHYSIOLOGY

Alcohol dehydrogenase 1 ( ADH1 ) confers both abiotic and biotic stress resistance in Arabidopsis

(2017) Haitao Shi et al.   PLANT SCIENCE

Fine mapping of QTL qCTB10-2 that confers cold tolerance at the booting stage in rice

(2017) Jilong Li et al.   THEORETICAL AND APPLIED GENETICS

A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice

(2017) Lin Zhang et al.   Nature Communications

Natural variation in CTB4a enhances rice adaptation to cold habitats

(2017) Zhanying Zhang et al.   Nature Communications

ABA pretreatment enhances the chilling tolerance of a chilling-sensitive rice cultivar

(2017) Xiang Hongtao et al.   Brazilian Journal of Botany

Effects of Low Temperature Stress on Spikelet-Related Parameters during Anthesis in Indica–Japonica Hybrid Rice

(2017) Yanhua Zeng et al.   Frontiers in Plant Science

Mapping QTL for Seed Germinability under Low Temperature Using a New High-Density Genetic Map of Rice

(2017) Ningfei Jiang et al.   Frontiers in Plant Science

Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.)

(2017) Mi Young Byun et al.   Frontiers in Plant Science

Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI)

(2017) Partha S. Biswas et al.   3 Biotech

Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI)

(2017) Partha S. Biswas et al.   3 Biotech

Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis

(2017) Ehsan Shakiba et al.   PLoS One

Inheritance of rice cold tolerance at the seedling stage

(2017) Renata Pereira da Cruz et al.   SCIENTIA AGRICOLA

Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice

(2016) Chenmin Huo et al.   MOLECULAR & CELLULAR PROTEOMICS

Comparative metabolomic analysis reveals a reactive oxygen species-dominated dynamic model underlying chilling environment adaptation and tolerance in rice

(2016) Jingyu Zhang et al.   NEW PHYTOLOGIST

Combining mapping of physiological quantitative trait loci and transcriptome for cold tolerance for counteracting male sterility induced by low temperatures during reproductive stage in rice

(2016) Hiroyuki Shimono et al.   PHYSIOLOGIA PLANTARUM

Detection of QTLs for cold tolerance of rice cultivar ‘Kuchum’ and effect of QTL pyramiding

(2016) Takashi Endo et al.   THEORETICAL AND APPLIED GENETICS

The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress

(2016) Lanlan Wu et al.   Rice

Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice

(2016) Dan Wang et al.   Rice

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Overexpression of OsmiR156k leads to reduced tolerance to cold stress in rice (Oryza Sativa)

(2015) Na Cui et al.   MOLECULAR BREEDING

Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and drought conditions

(2015) Michael L Nuccio et al.   NATURE BIOTECHNOLOGY

New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis

(2015) Yan Lv et al.   PLANT CELL AND ENVIRONMENT

Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice

(2015) Huimin Fang et al.   PLANT MOLECULAR BIOLOGY

Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat

(2015) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

Photoprotection as a Trait for Rice Yield Improvement: Status and Prospects

(2015) Erik H. Murchie et al.   Rice

Sustained low abscisic acid levels increase seedling vigor under cold stress in rice (Oryza sativa L.)

(2015) Ryosuke Mega et al.   Scientific Reports

Connecting proline metabolism and signaling pathways in plant senescence

(2015) Lu Zhang et al.   Frontiers in Plant Science

Genetic Analysis of Cold Tolerance at the Germination and Booting Stages in Rice by Association Mapping

(2015) Yinghua Pan et al.   PLoS One

Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice

(2015) Yajun Zhu et al.   PLoS One

Mapping QTLs for cold tolerance at germination and the early seedling stage in rice (Oryza sativaL.)

(2014) Aloka Lanka Ranawake et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.)

(2014) Suk-Man Kim et al.   MOLECULAR GENETICS AND GENOMICS

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing

(2014) I. M. Henry et al.   PLANT CELL

RiceLTG1is involved in adaptive growth and fitness under low ambient temperature

(2014) Guangwen Lu et al.   PLANT JOURNAL

Reduction of Gibberellin by Low Temperature Disrupts Pollen Development in Rice

(2014) T. Sakata et al.   PLANT PHYSIOLOGY

Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins

(2014) Kazi Md. Kamrul Huda et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.)

(2014) Sun-ting Wang et al.   PLoS One

Fine Mapping of qRC10-2, a Quantitative Trait Locus for Cold Tolerance of Rice Roots at Seedling and Mature Stages

(2014) Ning Xiao et al.   PLoS One

Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings

(2014) Ning Xiao et al.   THEORETICAL AND APPLIED GENETICS

Genetical and morphological characterization of cold tolerance at fertilization stage in rice

(2013) Hiroshi Shinada et al.   BREEDING SCIENCE

Variation of the OsGI intron and its phenotypic associations in Oryza rufipogon Griff. and Oryza sativa L.

(2013) Y. Dong et al.   GENETICS AND MOLECULAR RESEARCH

Impact of chilling injury and global warming on rice yield in Heilongjiang Province

(2013) Xiaofei Liu et al.   Journal of Geographical Sciences

The riceOsV4encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress

(2013) Xiaodi Gong et al.   Journal of Integrative Plant Biology

Construction of a genomewide RNAi mutant library in rice

(2013) Lei Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Overexpression of stress-inducible OsBURP16, theβsubunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice

(2013) HUANHUAN LIU et al.   PLANT CELL AND ENVIRONMENT

Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.)

(2013) CHUNHUA YANG et al.   PLANT CELL AND ENVIRONMENT

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice

(2012) An Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for Cold Tolerance in Rice

(2012) Fengxia Liu et al.   Molecular Plant

Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance

(2012) A. Finka et al.   PLANT CELL

A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)

(2012) Ji Huang et al.   PLANT MOLECULAR BIOLOGY

Changes in rice disasters across China in recent decades and the meteorological and agronomic causes

(2012) Fulu Tao et al.   Regional Environmental Change

Cold sensitivity in rice (Oryza sativaL.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2

(2011) Sang-Ic Kim et al.   BIOCHEMICAL JOURNAL

Quantitative trait loci for cold tolerance of rice recombinant inbred lines in low temperature environments

(2011) Wenzhu Jiang et al.   MOLECULES AND CELLS

Response to photoxidative stress induced by cold in japonica rice is genotype dependent

(2011) Victoria Bonnecarrère et al.   PLANT SCIENCE

A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis

(2011) Guo-Yun Xu et al.   PLANTA

Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress

(2011) Shi-Yong Song et al.   PLANTA

Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice

(2011) Hao-Wen Li et al.   PLANTA

Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, ‘Lijiangxintuanheigu’, in rice, Oryza sativa L.

(2011) S. Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

A QTL controlling low temperature induced spikelet sterility at booting stage in rice

(2010) C. Ye et al.   EUPHYTICA

Difference in chilling-induced flavonoid profiles, antioxidant activity and chilling tolerance between soybean near-isogenic lines for the pubescence color gene

(2010) Kyoko Toda et al.   JOURNAL OF PLANT RESEARCH

Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage

(2010) Maiko Koseki et al.   MOLECULAR GENETICS AND GENOMICS

Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2010) Kenji Fujino et al.   PLANT MOLECULAR BIOLOGY

A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice

(2010) C. F. Su et al.   PLANT PHYSIOLOGY

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE

Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line

(2010) Lei Zhou et al.   THEORETICAL AND APPLIED GENETICS

Studies on rice seed quality through analysis of a large-scale T-DNA insertion population

(2009) Fang-Fang Fu et al.   CELL RESEARCH

Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants

(2009) Soo-Jin Kim et al.   MOLECULES AND CELLS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Enhanced Tolerance to Chilling Stress in OsMYB3R-2 Transgenic Rice Is Mediated by Alteration in Cell Cycle and Ectopic Expression of Stress Genes

(2009) Q. Ma et al.   PLANT PHYSIOLOGY

Proline: a multifunctional amino acid

(2009) László Szabados et al.   TRENDS IN PLANT SCIENCE

Effect of Cold-Water Irrigation on Grain Quality Traits in japonica Rice Varieties from Yunnan Province, China

(2009) Guo-zhen ZHAO et al.   Rice Science

RICD: A rice indica cDNA database resource for rice functional genomics

(2008) Tingting Lu et al.   BMC PLANT BIOLOGY

Collection and Comparative Analysis of 1888 Full-length cDNAs from Wild Rice Oryza rufipogon Griff. W1943

(2008) T. Lu et al.   DNA RESEARCH

Genetic engineering of rice capable of synthesizing fructans and enhancing chilling tolerance

(2008) A. Kawakami et al.   JOURNAL OF EXPERIMENTAL BOTANY

Relationships between Phosphatidylglycerol Molecular Species of Thylakoid Membrane Lipids and Sensitivities to Chilling-induced Photoinhibition in Rice

(2008) Su-Qin Zhu et al.   Journal of Integrative Plant Biology

Chilling stress-induced proteomic changes in rice roots

(2008) Dong-Gi Lee et al.   JOURNAL OF PLANT PHYSIOLOGY

The Cold-Inducible CBF1 Factor-Dependent Signaling Pathway Modulates the Accumulation of the Growth-Repressing DELLA Proteins via Its Effect on Gibberellin Metabolism

(2008) P. Achard et al.   PLANT CELL

Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice

(2008) Vydehi Kanneganti et al.   PLANT MOLECULAR BIOLOGY

Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes

(2008) Liang-Fa Ge et al.   PLANTA

Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2008) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL analysis of cold tolerance at seedling stage in rice (Oryza sativa L.) using recombination inbred lines

(2007) Ling Jiang et al.   JOURNAL OF CEREAL SCIENCE

Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice near-isogenic line

(2007) Li-Ming Xu et al.   PLANT SCIENCE