4.7 Article

Design, Synthesis, and Evaluation of Potent, Selective, and Bioavailable AKT Kinase Degraders

Journal

JOURNAL OF MEDICINAL CHEMISTRY
Volume 64, Issue 24, Pages 18054-18081

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.jmedchem.1c01476

Keywords

-

Funding

  1. Icahn School of Medicine at Mount Sinai
  2. National Cancer Institute (NCI) at the National Institutes of Health (NIH) [R35CA220491]
  3. NCI at the NIH [P30CA196521]
  4. Leo and Julia Forchheimer Foundation Postdoc Fellowship
  5. National Institutes of Health SIG grants [1S10OD025132, 1S10OD028504]
  6. T32 postdoc fellow training grant [T32CA078207]

Ask authors/readers for more resources

AKT, a critical node in the PI3K/AKT/m-TOR signaling pathway, is strongly correlated with cancer. Two novel and potent AKT degraders were identified, showing the ability to induce AKT protein degradation and inhibit cancer cell proliferation.
The serine/threonine kinase AKT functions as a critical node of the phosphatidylinositol 3-kinase (PI3K)/AKT/mammalian target of rapamycin (m-TOR)signaling pathway. Aberrant activation and overexpression of AKT are strongly correlated with numerous human cancers. To date, only two AKT degraders with no structure & minus;activityrelationship (SAR) results have been reported. Through extensive SAR studies on variouslinkers, E3 ligase ligands, and AKT binding moieties, we identified two novel and potentAKT proteolysis targeting chimera (PROTAC) degraders: von Hippel & minus;Lindau (VHL)-recruiting degrader13(MS98) and cereblon (CRBN)-recruiting degrader25(MS170).These two compounds selectively induced robust AKT protein degradation, inhibiteddownstream signaling, and suppressed cancer cell proliferation. Moreover, these twodegraders exhibited good plasma exposure levels in mice through intraperitoneal injection. Overall, our comprehensive SAR studies led to the discovery of degraders13and25, which are potentially useful chemical tools to investigate biological and pathogenic functions of AKT in vitro and in vivo.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Multidisciplinary Sciences

ZMYND11-MBTD1 induces leukemogenesis through hijacking NuA4/TIP60 acetyltransferase complex and a PWWP-mediated chromatin association mechanism

Jie Li, Phillip M. Galbo, Weida Gong, Aaron J. Storey, Yi-Hsuan Tsai, Xufen Yu, Jeong Hyun Ahn, Yiran Guo, Samuel G. Mackintosh, Ricky D. Edmondson, Stephanie D. Byrum, Jason E. Farrar, Shenghui He, Ling Cai, Jian Jin, Alan J. Tackett, Deyou Zheng, Gang Greg Wang

Summary: This study reveals that the fusion gene ZMYND11-MBTD1 (ZM) induces AML in a subset of patients by activating the NuA4/TIP60 histone acetyltransferase complex. ZM directly regulates the expression of pro-leukemic genes, promoting the development of AML through sustaining an active chromatin state.

NATURE COMMUNICATIONS (2021)

Article Chemistry, Medicinal

Discovery of Potent, Selective, and In Vivo Efficacious AKT Kinase Protein Degraders via Structure-Activity Relationship Studies

Xufen Yu, Jia Xu, Yudao Shen, Kaitlyn M. Cahuzac, Kwang-Su Park, Brandon Dale, Jing Liu, Ramon E. Parsons, Jian Jin

Summary: In this study, we reported a potent AKT degrader MS21 and its structure-activity relationship (SAR) studies. Additionally, we discovered another VHL-recruiting AKT degrader MS143 with similar efficacy as MS21, as well as a novel CRBN-recruiting PROTAC MS5033. These compounds effectively degraded AKT by hijacking the ubiquitin-proteasome system and showed significant inhibition of cell growth in multiple cancer cell lines. Furthermore, they exhibited good plasma exposure levels in mice and were suitable for in vivo studies.

JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Cell Biology

EZH2 noncanonically binds cMyc and p300 through a cryptic transactivation domain to mediate gene activation and promote oncogenesis

Jun Wang, Xufen Yu, Weida Gong, Xijuan Liu, Kwang-Su Park, Anqi Ma, Yi-Hsuan Tsai, Yudao Shen, Takashi Onikubo, Wen-Chieh Pi, David F. Allison, Jing Liu, Wei-Yi Chen, Ling Cai, Robert G. Roeder, Jian Jin, Gang Greg Wang

Summary: The study reveals the noncanonical oncogenic roles of EZH2 in acute leukaemia, demonstrating its additional functions in binding cMyc and activating gene expression. To target the multifaceted tumorigenic functions of EZH2, the researchers developed a degrader, MS177, which effectively depletes both canonical and noncanonical complexes of EZH2 and shows a faster and more potent effect in suppressing cancer growth.

NATURE CELL BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Discovery of a dual WDR5 and Ikaros PROTAC degrader as an anti-cancer therapeutic

Dongxu Li, Xufen Yu, Jithesh Kottur, Weida Gong, Zhao Zhang, Aaron J. Storey, Yi-Hsuan Tsai, Hidetaka Uryu, Yudao Shen, Stephanie D. Byrum, Rick D. Edmondson, Samuel G. Mackintosh, Ling Cai, Zhijie Liu, Aneel K. Aggarwal, Alan J. Tackett, Jing Liu, Jian Jin, Gang Greg Wang

Summary: A new proteolysis targeting chimera (PROTAC) named MS40 has been developed to selectively degrade WDR5 and Ikaros, showing promising anti-cancer effects in MLL-rearranged leukemias.

ONCOGENE (2022)

Article Multidisciplinary Sciences

A PRC2-Kdm5b axis sustains tumorigenicity of acute myeloid leukemia

Zhihong Ren, Arum Kim, Yu-Ting Huang, Wen-Chieh Pi, Weida Gong, Xufen Yu, Jun Qi, Jian Jin, Ling Cai, Robert G. Roeder, Wei-Yi Chen, Gang Greg Wang

Summary: Acute myeloid leukemias (AMLs) with NUP98-NSD1 or MLL-r have stemness-related gene signatures and poor prognosis. Inhibiting EZH2 enzymatic activity shows that PRC2 is crucial for tumorigenicity in NUP98-NSD1(+) AML, and Kdm5b is directly repressed by PRC2. Kdm5b not only suppresses AML growth but also attenuates the anti-AML effects of PRC2 inhibitors.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Chemistry, Medicinal

Exploring Degradation of Mutant and Wild-Type Epidermal Growth Factor Receptors Induced by Proteolysis-Targeting Chimeras

Xufen Yu, Meng Cheng, Kaylene Lu, Yudao Shen, Yue Zhong, Jing Liu, Yue Xiong, Jian Jin

Summary: This study reports the discovery of two novel EGFR degraders that selectively degrade the mutant EGFR but not the wild-type EGFR through both ubiquitination/proteasome and autophagy/lysosome pathways. Mechanistic studies reveal that the mutant EGFR can effectively form EGFR-PROTAC-E3 ligase ternary complexes.

JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Chemistry, Multidisciplinary

TF-DUBTACs Stabilize Tumor Suppressor Transcription Factors

Jing Liu, Xufen Yu, He Chen, H. Umit Kaniskan, Ling Xie, Xian Chen, Jian Jin, Wenyi Wei

Summary: A platform named TF-DUBTAC has been developed to selectively stabilize tumor suppressor transcription factors through linking a DNA oligonucleotide to a covalent ligand of the deubiquitinase OTUB1. This method successfully stabilized FOXO3A, p53, and IRF3 in cells, providing a potential therapeutic means to suppress tumorigenesis.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2022)

Article Biochemistry & Molecular Biology

A cryptic transactivation domain of EZH2 binds AR and AR's splice variant, promoting oncogene activation and tumorous transformation

Jun Wang, Kwang-Su Park, Xufen Yu, Weida Gong, H. Shelton Earp, Gang Greg Wang, Jian Jin, Ling Cai

Summary: This study reveals the non-canonical (co-)activator recruitment and gene activation functions of EZH2 in prostate cancer and suggests that EZH2-targeting PROTACs could be a potential therapeutic approach for aggressive prostate cancer.

NUCLEIC ACIDS RESEARCH (2022)

Article Biology

Human WDR5 promotes breast cancer growth and metastasis via KMT2-independent translation regulation

Wesley L. Cai, Jocelyn Fang-Yi Chen, Huacui Chen, Emily Wingrove, Sarah J. Kurley, Lok Hei Chan, Meiling Zhang, Anna Arnal-Estape, Minghui Zhao, Amer Balabaki, Wenxue Li, Xufen Yu, Ethan D. Krop, Yali Dou, Yansheng Liu, Jian Jin, Thomas F. Westbrook, Don X. Nguyen, Qin Yan

Summary: Metastatic breast cancer is a leading cause of cancer-related deaths in women, with limited effective therapies available. Research has shown that reversible epigenetic mechanisms play a crucial role in tumor progression and metastasis. A recent study identified WDR5 as an actionable epigenetic regulator that is necessary for metastatic progression in triple-negative breast cancer models. Knockdown of WDR5 in breast cancer cells impairs their tumorigenic and metastatic capabilities, likely through increasing ribosomal gene expression and translation efficiency. Inhibition or degradation of WDR5 hampers cellular translation rate and clonogenic ability. Combining WDR5 targeting with mTOR inhibitors leads to potent suppression of translation and proliferation in breast cancer cells. These findings provide new therapeutic strategies for treating metastatic breast cancer.

ELIFE (2022)

Article Biochemistry & Molecular Biology

Dissecting and targeting noncanonical functions of EZH2 in multiple myeloma via an EZH2 degrader

Xufen Yu, Jun Wang, Weida Gong, Anqi Ma, Yudao Shen, Chengwei Zhang, Xijuan Liu, Ling Cai, Jing Liu, Gang Greg Wang, Jian Jin

Summary: This passage focuses on the noncanonical function of EZH2 in the development of multiple myeloma (MM), and proposes a novel therapeutic strategy, pharmacological degradation of EZH2, for treating EZH2-dependent MM.

ONCOGENE (2023)

Article Chemistry, Medicinal

Discovery of novel BTK PROTACs with improved metabolic stability via linker rigidification strategy

Song Chen, Zhendong Chen, Lixue Lu, Yunpeng Zhao, Ronghui Zhou, Qiong Xie, Yongzhi Shu, Jun Lin, Xufen Yu, Yonghui Wang

Summary: Using PROTAC technology, researchers have discovered a highly potent BTK PROTAC compound that can effectively degrade hyperactivated B-cell receptor signaling pathway in various lymphoma cancers. Through structure-activity relationship studies, they have identified a novel CRBN-recruiting compound that can concentration-dependently induce BTK degradation and suppress cell growth with improved metabolic stability. This research provides a potential therapeutic approach for BTK-associated human cancers and diseases.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2023)

Article Biotechnology & Applied Microbiology

Chemical Epigenetic Regulation of Adeno-Associated Virus Delivered Transgenes

Jessica D. Umana, Sara R. Wasserman, Liujiang Song, Arushi A. Goel, Xufen Yu, Jian Jin, Nathaniel A. Hathaway

Summary: In this study, a chemically controllable AAV transgene expression technology was validated in vitro using chemical epigenetic modifiers (CEMs). This technology enhances AAV transgene expression by utilizing endogenous epigenetic machinery and can be reversibly controlled. By providing temporal gene expression control, this technology has the potential to increase the safety and efficiency of AAV-based research and therapies.

HUMAN GENE THERAPY (2023)

Review Chemistry, Multidisciplinary

Chemically induced degradation of epigenetic targets

Md Kabir, Xufen Yu, H. Umit Kaniskan, Jian Jin

Summary: Proteolysis-targeting chimeras (PROTACs) are small molecules that induce targeted degradation of proteins by forming ternary complexes with E3 ligases. They have the advantage of targeting both canonical and noncanonical functions of epigenetic targets, resulting in greater therapeutic efficacy. This review analyzes published PROTAC degraders of epigenetic writer, reader, and eraser proteins and discusses their mechanism of action and advantages in cancer treatment. Overall, pharmacological degradation of epigenetic targets has emerged as an effective strategy against cancer.

CHEMICAL SOCIETY REVIEWS (2023)

Article Chemistry, Medicinal

Novel Allosteric Inhibitor-Derived AKT Proteolysis Targeting Chimeras (PROTACs) Enable Potent and Selective AKT Degradation in KRAS/BRAF Mutant Cells

Xufen Yu, Jia Xu, Kaitlyn M. Cahuzac, Ling Xie, Yudao Shen, Xian Chen, Jing Liu, Ramon E. Parsons, Jian Jin

Summary: AKT is an important target for cancer therapeutics and significant advancements have been made in developing inhibitors. Recent research has discovered a novel AKT proteolysis targeting chimera (PROTAC) that shows potential in degrading AKT in cancer cells harboring KRAS/BRAF mutations.

JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Chemistry, Medicinal

Targeting Triple-Negative Breast Cancer by a Novel Proteolysis Targeting Chimera Degrader of Enhancer of Zeste Homolog 2

Brandon Dale, Chris Anderson, Kwang-Su Park, H. Umit Kaniskan, Anqi Ma, Yudao Shen, Chengwei Zhang, Ling Xie, Xian Chen, Xufen Yu, Jian Jin

Summary: EZH2 overexpression is associated with poor prognosis in TNBC. A novel EZH2 PROTAC degrader, MS8815, has been discovered and shown to effectively suppress the growth of TNBC cells.

ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE (2022)

No Data Available