Microbiome characteristics and the key biochemical reactions identified on stone world cultural heritage under different climate conditions

Biotransformation of lincomycin and fluoroquinolone antibiotics by the ammonia oxidizers AOA, AOB and comammox: A comparison of removal, pathways, and mechanisms

(2021) Li-Jun Zhou et al.   WATER RESEARCH

Sensitive protein alignments at tree-of-life scale using DIAMOND

(2021) Benjamin Buchfink et al.   NATURE METHODS

Selective enrichment of comammox from activated sludge using antibiotics

(2021) Yulin Wang et al.   WATER RESEARCH

Microbial diversity and composition of the Preah Vihear temple in Cambodia by high-throughput sequencing based on genomic DNA and RNA

(2020) Han Meng et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Microbiome and nitrate removal processes by microorganisms on the ancient Preah Vihear temple of Cambodia revealed by metagenomics and N-15 isotope analyses

(2020) Xinghua Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metagenome Across a Geochemical Gradient of Indian Stone Ruins Found at Historic Sites in Tamil Nadu, India

(2020) Nathaniel J. Ennis et al.   MICROBIAL ECOLOGY

Microbial deterioration and sustainable conservation of stone monuments and buildings

(2020) Xiaobo Liu et al.   Nature Sustainability

A Two-Step Strategy for the Rapid Enrichment of Nitrosocosmicus-Like Ammonia-Oxidizing Thaumarchaea

(2019) Liangting Liu et al.   Frontiers in Microbiology

Elucidating the ecological networks in stone‐dwelling microbiomes

(2019) Moussa Louati et al.   ENVIRONMENTAL MICROBIOLOGY

Biochemical reactions and mechanisms involved in the biodeterioration of stone world cultural heritage under the tropical climate conditions

(2019) Guoxia Zhang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

First evaluation of the microbiome of built cultural heritage by using the Ion Torrent next generation sequencing platform

(2018) Justyna Adamiak et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Diversity of Bacteria and the Characteristics of Actinobacteria Community Structure in Badain Jaran Desert and Tengger Desert of China

(2018) Ye Sun et al.   Frontiers in Microbiology

Deterioration-Associated Microbiome of Stone Monuments: Structure, Variation, and Assembly

(2018) Qiang Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiological community of the Royal Palace in Angkor Thom and Beng Mealea of Cambodia by Illumina sequencing based on 16S rRNA gene

(2018) Xiaowei Zhang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Nutrient cycling potential within microbial communities on culturally important stoneworks

(2018) Elisabetta Zanardini et al.   Environmental Microbiology Reports

More wide occurrence and dominance of ammonia-oxidizing archaea than bacteria at three Angkor sandstone temples of Bayon, Phnom Krom and Wat Athvea in Cambodia

(2017) Han Meng et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Geomicrobiology of the built environment

(2017) Geoffrey Michael Gadd   Nature Microbiology

Analysis of biofilm bacterial communities under different shear stresses using size-fractionated sediment

(2017) Hongwei Fang et al.   Scientific Reports

Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing

(2016) Guglielmina Chimienti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Higher diversity and abundance of ammonia-oxidizing archaea than bacteria detected at the Bayon Temple of Angkor Thom in Cambodia

(2016) Han Meng et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Geodermatophilus pulveris sp. nov., a gamma-radiation-resistant actinobacterium isolated from the Sahara desert

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Geodermatophilus aquaeductus sp. nov., isolated from the ruins of Hadrian’s aqueduct

(2015) Karima Hezbri et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Metabolomic and high-throughput sequencing analysis—modern approach for the assessment of biodeterioration of materials from historic buildings

(2015) Beata Gutarowska et al.   Frontiers in Microbiology

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Actinobacteria—An Ancient Phylum Active in Volcanic Rock Weathering

(2013) Charles S. Cockell et al.   GEOMICROBIOLOGY JOURNAL

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert

(2013) Maria del Carmen Montero-Calasanz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Contrasted resistance of stone-dwelling Geodermatophilaceae species to stresses known to give rise to reactive oxygen species

(2012) Maher Gtari et al.   FEMS MICROBIOLOGY ECOLOGY

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

(2012) Daniel R. Mende et al.   PLoS One

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria

(2010) B.-J. Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Analysis of Fresh and Old Microbial Biofilms on Bayon Temple Sandstone of Angkor Thom, Cambodia

(2010) Wensheng Lan et al.   MICROBIAL ECOLOGY

Bacteria in Weathered Basaltic Glass, Iceland

(2009) Charles S. Cockell et al.   GEOMICROBIOLOGY JOURNAL

Detection and Elimination of Cyanobacteria from Frescoes: The Case of the St. Brizio Chapel (Orvieto Cathedral, Italy)

(2008) F. Cappitelli et al.   MICROBIAL ECOLOGY