Biochemical and Expression Analyses Revealed the Involvement of Proanthocyanidins and/or Their Derivatives in Fiber Pigmentation of Gossypium stocksii

Multi‐omics assisted identification of the key and species‐specific regulatory components of drought‐tolerant mechanisms in Gossypium stocksii

(2021) Dongliang Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Breeding Next-Generation Naturally Colored Cotton

(2021) Jie Sun et al.   TRENDS IN PLANT SCIENCE

Laccase-Mediated Flavonoid Polymerization Leads to the Pericarp Browning of Litchi Fruit

(2021) Junbin Wei et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Genome-wide identification of cold responsive transcription factors in Brassica napus L

(2020) Liping Ke et al.   BMC PLANT BIOLOGY

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution

(2020) Gai Huang et al.   NATURE GENETICS

Flavonoid biosynthetic and starch and sucrose metabolic pathways are involved in the pigmentation of naturally brown-colored cotton fibers

(2020) Zhen Peng et al.   INDUSTRIAL CROPS AND PRODUCTS

Functional analysis of GhCHS, GhANR and GhLAR in colored fiber formation of Gossypium hirsutum L

(2019) Jianfang Gao et al.   BMC PLANT BIOLOGY

Up-regulation of GhTT2-3A in cotton fibres during secondary wall thickening results in brown fibres with improved quality

(2018) Qian Yan et al.   PLANT BIOTECHNOLOGY JOURNAL

Flavonoid biosynthesis controls fiber color in naturally colored cotton

(2018) Hai-Feng Liu et al.   PeerJ

Understanding the genetic regulation of anthocyanin biosynthesis in plants – Tools for breeding purple varieties of fruits and vegetables

(2018) Samuel Chaves-Silva et al.   PHYTOCHEMISTRY

Molecular analysis of caffeoyl residues related to pigmentation in green cotton fibers

(2017) Hongjie Feng et al.   JOURNAL OF EXPERIMENTAL BOTANY

TheGhTT2_A07gene is linked to the brown colour and natural flame retardancy phenotypes ofLc1cotton (Gossypium hirsutumL.) fibres

(2016) Doug J. Hinchliffe et al.   JOURNAL OF EXPERIMENTAL BOTANY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Engineering anthocyanin biosynthesis in plants

(2014) Yang Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Molecular analysis of proanthocyanidins related to pigmentation in brown cotton fibre ( Gossypium hirsutum L.)

(2014) Hongjie Feng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome and Biochemical Analyses Revealed a Detailed Proanthocyanidin Biosynthesis Pathway in Brown Cotton Fiber

(2014) Yue-Hua Xiao et al.   PLoS One

Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

CottonGen: a genomics, genetics and breeding database for cotton research

(2013) Jing Yu et al.   NUCLEIC ACIDS RESEARCH

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Analysis of Flavonoids and the Flavonoid Structural Genes in Brown Fiber of Upland Cotton

(2013) Hongjie Feng et al.   PLoS One

Gene Silencing of BnTT10 Family Genes Causes Retarded Pigmentation and Lignin Reduction in the Seed Coat of Brassica napus

(2013) Kai Zhang et al.   PLoS One

A comparative proteomic analysis provides insights into pigment biosynthesis in brown color fiber

(2012) Yan-Jun Li et al.   Journal of Proteomics

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

The accumulation of pigment in fiber related to proanthocyanidins synthesis for brown cotton

(2011) Tingchun Li et al.   ACTA PHYSIOLOGIAE PLANTARUM

The Mysteries of Proanthocyanidin Transport and Polymerization

(2010) J. Zhao et al.   PLANT PHYSIOLOGY