Analysis of the Genome of the Heavy Metal Resistant and Hydrocarbon-Degrading Rhizospheric Pseudomonas qingdaonensis ZCR6 Strain and Assessment of Its Plant-Growth-Promoting Traits

Genomic characterization of a polyvalent hydrocarbonoclastic bacterium Pseudomonas sp. strain BUN14

(2021) Mouna Mahjoubi et al.   Scientific Reports

Rhizosphere Microbial Communities and Heavy Metals

(2021) Anna Barra Caracciolo et al.   Microorganisms

Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer

(2020) Hubert Szczerba et al.   Scientific Reports

Prospects and applications of plant growth promoting rhizobacteria to mitigate soil metal contamination: A review

(2020) JunKang Guo et al.   CHEMOSPHERE

Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans

(2020) Abdul Aziz Eida et al.   Frontiers in Microbiology

The CzcCBA Efflux System Requires the CadA P-Type ATPase for Timely Expression Upon Zinc Excess in Pseudomonas aeruginosa

(2020) Verena Ducret et al.   Frontiers in Microbiology

Complete Genome Sequence of Pseudomonas psychrotolerans CS51, a Plant Growth-Promoting Bacterium, Under Heavy Metal Stress Conditions

(2020) Sang-Mo Kang et al.   Microorganisms

Capacity of Pseudomonas Strains to Degrade Hydrocarbons, Produce Auxins and Maintain Plant Growth under Normal Conditions and in the Presence of Petroleum Contaminants

(2020) Margarita Bakaeva et al.   Plants-Basel

Comparative Study on Multiway Enhanced Bio- and Phytoremediation of Aged Petroleum-Contaminated Soil

(2020) Natalia Ptaszek et al.   Agronomy-Basel

Genome Mining and Evaluation of the Biocontrol Potential of Pseudomonas fluorescens BRZ63, a New Endophyte of Oilseed Rape (Brassica napus L.) against Fungal Pathogens

(2020) Daria Chlebek et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pseudomonas qingdaonensis sp. nov., an aflatoxin-degrading bacterium, isolated from peanut rhizospheric soil

(2019) Ming-Qing Wang et al.   ARCHIVES OF MICROBIOLOGY

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Hydrogen Sulfide Promotes Nodulation and Nitrogen Fixation in Soybean–Rhizobia Symbiotic System

(2019) Hang Zou et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Complete Genome Sequence of the Plant Growth-Promoting Bacterium Hartmannibacter diazotrophicus Strain E19T

(2019) Christian Suarez et al.   International Journal of Genomics

Pseudomonas sp. COW3 Produces New Bananamide-Type Cyclic Lipopeptides with Antimicrobial Activity against Pythium myriotylum and Pyricularia oryzae

(2019) Olumide Owolabi Omoboye et al.   MOLECULES

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

(2019) James J Davis et al.   NUCLEIC ACIDS RESEARCH

Characterization of Cd2+ biosorption by Pseudomonas sp. strain 375, a novel biosorbent isolated from soil polluted with heavy metals in Southern China

(2019) Shaozu Xu et al.   CHEMOSPHERE

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems

(2019) Zhongmin Dai et al.   ISME Journal

Understanding the molecular mechanisms for the enhanced phytoremediation of heavy metals through plant growth promoting rhizobacteria: A review

(2019) Srinivas Ravi Manoj et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Construction of long-chain alkane degrading bacteria and its application in bioremediation of crude oil pollution

(2018) Long Meng et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pseudomonas laurylsulfatovorans sp. nov., sodium dodecyl sulfate degrading bacteria, isolated from the peaty soil of a wastewater treatment plant

(2018) Ewa M. Furmanczyk et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Pseudomonas aeruginosa L10: A Hydrocarbon-Degrading, Biosurfactant-Producing, and Plant-Growth-Promoting Endophytic Bacterium Isolated From a Reed (Phragmites australis)

(2018) Tao Wu et al.   Frontiers in Microbiology

Optimisation of culture composition for glyphosate degradation by Burkholderia vietnamiensis strain AQ5-12

(2018) Motharasan Manogaran et al.   3 Biotech

Optimisation of culture composition for glyphosate degradation by Burkholderia vietnamiensis strain AQ5-12

(2018) Motharasan Manogaran et al.   3 Biotech

Characterization of Cu and Cd biosorption by Pseudomonas sp. strain DC-B3 isolated from metal mine soil

(2018) Y. Liang et al.   International Journal of Environmental Science and Technology

Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth

(2018) Sajjad Asaf et al.   3 Biotech

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence and Metabolic Analysis of a Fluoranthene-Degrading Strain Pseudomonas aeruginosa DN1

(2018) Chunqiu He et al.   Frontiers in Microbiology

Distribution of Arsenic Resistance Genes in Prokaryotes

(2018) Ibtissem Ben Fekih et al.   Frontiers in Microbiology

Metal-tolerant endophytic bacteria associated with Silene vulgaris support the Cd and Zn phytoextraction in non-host plants

(2018) T. Płociniczak et al.   CHEMOSPHERE

Effect of a bacterial consortium on the degradation of polycyclic aromatic hydrocarbons and bacterial community composition in Chinese soils

(2017) Guang Guo et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Comprehensive genomic analysis of a plant growth-promoting rhizobacterium Pantoea agglomerans strain P5

(2017) Vahid Shariati J. et al.   Scientific Reports

Genetic Diversity of Nitrogen-Fixing and Plant Growth Promoting Pseudomonas Species Isolated from Sugarcane Rhizosphere

(2017) Hai-Bi Li et al.   Frontiers in Microbiology

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

(2017) Cristina Andrés-Barrao et al.   Frontiers in Microbiology

A novel rhamnolipid-producing Pseudomonas aeruginosa ZS1 isolate derived from petroleum sludge suitable for bioremediation

(2017) Tao Cheng et al.   AMB Express

Study on the biodegradation of crude oil by free and immobilized bacterial consortium in marine environment

(2017) Qingguo Chen et al.   PLoS One

Phytoremediation potential of Acorus calamus in soils co-contaminated with cadmium and polycyclic aromatic hydrocarbons

(2017) Nasreen Jeelani et al.   Scientific Reports

In silico analysis for prediction of degradative capacity of Pseudomonas putida SF1

(2016) Hitesh Tikariha et al.   GENE

Isolation of hydrocarbon-degrading and biosurfactant-producing bacteria and assessment their plant growth-promoting traits

(2016) Magdalena Pacwa-Płociniczak et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Production of lipopeptide biosurfactants by Bacillus atrophaeus 5-2a and their potential use in microbial enhanced oil recovery

(2016) Junhui Zhang et al.   Microbial Cell Factories

Detection of n-alkane biodegradation genes alkB and ladA in thermophilic hydrocarbon-oxidizing bacteria of the genera Aeribacillus and Geobacillus

(2016) T. P. Tourova et al.   MICROBIOLOGY

Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria

(2016) Xuezhu Zhu et al.   International Journal of Environmental Research and Public Health

Identification of the nitrogen-fixing Pseudomonas stutzeri major flagellar gene regulator FleQ and its role in biofilm formation and root colonization

(2016) Yao MA et al.   Journal of Integrative Agriculture

Potential of Polycyclic Aromatic Hydrocarbon-Degrading Bacterial Isolates to Contribute to Soil Fertility

(2016) Maryam Bello-Akinosho et al.   Biomed Research International

Moraxella catarrhalis AcrAB-OprM Efflux Pump Contributes to Antimicrobial Resistance and Is Enhanced during Cold Shock Response

(2015) Violeta Spaniol et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Complete genome sequence analysis of Pseudomonas aeruginosa N002 reveals its genetic adaptation for crude oil degradation

(2015) Dhrubajyoti Das et al.   GENOMICS

Identification of the PhoB Regulon and Role of PhoU in the Phosphate Starvation Response of Caulobacter crescentus

(2015) Emma A. Lubin et al.   JOURNAL OF BACTERIOLOGY

ArsH is an organoarsenical oxidase that confers resistance to trivalent forms of the herbicide monosodium methylarsenate and the poultry growth promoter roxarsone

(2015) Jian Chen et al.   MOLECULAR MICROBIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae

(2015) Pedro Martínez-García et al.   Standards in Genomic Sciences

An alginate-like exopolysaccharide biosynthesis gene cluster involved in biofilm aerial structure formation by Pseudomonas alkylphenolia

(2014) Kyoung Lee et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Endophytic bacteria: Prospects and applications for the phytoremediation of organic pollutants

(2014) Muhammad Afzal et al.   CHEMOSPHERE

Degradation, Phytoprotection and Phytoremediation of Phenanthrene by Endophyte Pseudomonas putida, PD1

(2014) Zareen Khan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterization of hydrocarbon-degrading and biosurfactant-producing Pseudomonas sp. P-1 strain as a potential tool for bioremediation of petroleum-contaminated soil

(2014) Magdalena Pacwa-Płociniczak et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Bacterial mechanisms for Cr(VI) resistance and reduction: an overview and recent advances

(2014) Munees Ahemad   FOLIA MICROBIOLOGICA

Comparative genomics of the protocatechuate branch of the β-ketoadipate pathway in the Roseobacter lineage

(2014) Catalina Maria Alejandro-Marín et al.   Marine Genomics

Two exopolyphosphatases with distinct molecular architectures and substrate specificities from the thermophilic green-sulfur bacterium Chlorobium tepidum TLS

(2014) T. Albi et al.   MICROBIOLOGY-SGM

Isolation, plant colonization potential, and phenanthrene degradation performance of the endophytic bacterium Pseudomonas sp. Ph6-gfp

(2014) Kai Sun et al.   Scientific Reports

The role of bacteria and mycorrhiza in plant sulfur supply

(2014) Jacinta Gahan et al.   Frontiers in Plant Science

Transporters in plant sulfur metabolism

(2014) Tamara Gigolashvili et al.   Frontiers in Plant Science

Molecular basis of active copper resistance mechanisms in Gram-negative bacteria

(2013) Kinga Bondarczuk et al.   CELL BIOLOGY AND TOXICOLOGY

Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production

(2013) F. Pérez-Montaño et al.   MICROBIOLOGICAL RESEARCH

The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4

(2013) Jin Duan et al.   PLoS One

Structural insights into diversity and n-alkane biodegradation mechanisms of alkane hydroxylases

(2013) Yurui Ji et al.   Frontiers in Microbiology

Characterization of Enterobacter intermedius MH8b and its use for the enhancement of heavy metals uptake by Sinapis alba L.

(2012) T. Płociniczak et al.   APPLIED SOIL ECOLOGY

Heavy metal toxicity to bacteria – Are the existing growth media accurate enough to determine heavy metal toxicity?

(2012) I.V.N. Rathnayake et al.   CHEMOSPHERE

Plant–bacteria partnerships for the remediation of hydrocarbon contaminated soils

(2012) Sumia Khan et al.   CHEMOSPHERE

Periplasmic proteins encoded by VCA0261-0260 and VC2216 genes together with copA and cueR products are required for copper tolerance but not for virulence in Vibrio cholerae

(2012) K. Marrero et al.   MICROBIOLOGY-SGM

The effect of plant growth-promoting rhizobacteria on the growth of rice (Oryza sativa L.) cropped in southern Brazilian fields

(2012) Rocheli de Souza et al.   PLANT AND SOIL

Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria

(2012) J.C. Whitney et al.   TRENDS IN MICROBIOLOGY

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Influence of putative exopolysaccharide genes on Pseudomonas putida KT2440 biofilm stability

(2011) Martin Nilsson et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of the Ethene- and Vinyl Chloride-Oxidizing Actinomycete Nocardioides sp. Strain JS614

(2011) N. V. Coleman et al.   JOURNAL OF BACTERIOLOGY

Metabolic regulation of Escherichia coli and its phoB and phoR genes knockout mutants under phosphate and nitrogen limitations as well as at acidic condition

(2011) Lolo Marzan et al.   Microbial Cell Factories

Microbial degradation of aromatic compounds — from one strategy to four

(2011) Georg Fuchs et al.   NATURE REVIEWS MICROBIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

The Homogentisate and Homoprotocatechuate Central Pathways Are Involved in 3- and 4-Hydroxyphenylacetate Degradation by Burkholderia xenovorans LB400

(2011) Valentina Méndez et al.   PLoS One

Rhizoremediation of diesel-contaminated soil using the plant growth-promoting rhizobacterium Gordonia sp. S2RP-17

(2010) Sun Hwa Hong et al.   BIODEGRADATION

Using soil bacteria to facilitate phytoremediation

(2010) Bernard R. Glick   BIOTECHNOLOGY ADVANCES

Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis

(2010) Katharina Hoelzle et al.   BMC MICROBIOLOGY

Genome-wide investigation and functional characterization of the β-ketoadipate pathway in the nitrogen-fixing and root-associated bacterium Pseudomonas stutzeri A1501

(2010) Danhua Li et al.   BMC MICROBIOLOGY

Selection of biosurfactan/bioemulsifier-producing bacteria from hydrocarbon-contaminated soil

(2010) Sabina Viramontes-Ramos et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Global regulation by the seven-component Pi signaling system

(2010) Yi-Ju Hsieh et al.   CURRENT OPINION IN MICROBIOLOGY

DNA sequence-based analysis of thePseudomonasspecies

(2010) Magdalena Mulet et al.   ENVIRONMENTAL MICROBIOLOGY

Copper Homeostasis inSalmonellaIs Atypical and Copper-CueP Is a Major Periplasmic Metal Complex

(2010) Deenah Osman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Distinct functional roles of homologous Cu+ efflux ATPases in Pseudomonas aeruginosa

(2010) Manuel González-Guerrero et al.   MOLECULAR MICROBIOLOGY

Potential of siderophore-producing bacteria for improving heavy metal phytoextraction

(2010) Mani Rajkumar et al.   TRENDS IN BIOTECHNOLOGY

TonB-dependent transporters and their occurrence in cyanobacteria

(2009) Oliver Mirus et al.   BMC BIOLOGY

The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis

(2009) Susanne Gebhard et al.   BMC MICROBIOLOGY

Expression of alkane monooxygenase (alkB) genes by plant-associated bacteria in the rhizosphere and endosphere of Italian ryegrass (Lolium multiflorum L.) grown in diesel contaminated soil

(2009) Verania Andria et al.   ENVIRONMENTAL POLLUTION

The MerE protein encoded by transposon Tn21is a broad mercury transporter inEscherichia coli

(2009) Masako Kiyono et al.   FEBS LETTERS

Bacterial endophyte-mediated naphthalene phytoprotection and phytoremediation

(2009) Kieran J. Germaine et al.   FEMS MICROBIOLOGY LETTERS

Ethylene levels are regulated by a plant encoded 1-aminocyclopropane-1-carboxylic acid deaminase

(2009) Lisa McDonnell et al.   PHYSIOLOGIA PLANTARUM

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

(2009) Alex Copeland et al.   Standards in Genomic Sciences

The interconversion of ACC deaminase and d-cysteine desulfhydrase by directed mutagenesis

(2008) Biljana Todorovic et al.   PLANTA

Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501

(2008) Y. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrocarbon degradation potential and activity of endophytic bacteria associated with prairie plants

(2008) L PHILLIPS et al.   SOIL BIOLOGY & BIOCHEMISTRY