The salmon louse genome: Copepod features and parasitic adaptations
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Title
The salmon louse genome: Copepod features and parasitic adaptations
Authors
Keywords
Genome assembly, FNII expansion, Arthropod, Peroxisome, Repetitive DNA, Major vault, Comparative genomics
Journal
GENOMICS
Volume 113, Issue 6, Pages 3666-3680
Publisher
Elsevier BV
Online
2021-08-15
DOI
10.1016/j.ygeno.2021.08.002
References
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Note: Only part of the references are listed.- Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis
- (2021) Cristian Gallardo-Escárate et al. Scientific Data
- The information continuum model of evolution
- (2021) Rasmus Skern-Mauritzen et al. BIOSYSTEMS
- The genome of the harpacticoid copepod Tigriopus japonicus: Potential for its use in marine molecular ecotoxicology
- (2020) Chang-Bum Jeong et al. AQUATIC TOXICOLOGY
- Host gill attachment causes blood-feeding by the salmon louse (Lepeophtheirus salmonis) chalimus larvae and alters parasite development and transcriptome
- (2020) Erna Irene Heggland et al. Parasites & Vectors
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative analysis of genomic repeat content in gomphocerine grasshoppers reveals expansion of satellite DNA and helitrons in species with unusually large genomes
- (2020) Abhijeet Shah et al. Genome Biology and Evolution
- Evolutionary origins of genomic adaptations in an invasive copepod
- (2020) David Ben Stern et al. Nature Ecology & Evolution
- An improved genome assembly and annotation of the Antarctic copepod Tigriopus kingsejongensis and comparison of fatty acid metabolism between T. kingsejongensis and the temperate copepod T. japonicus
- (2020) Min-Chul Lee et al. Comparative Biochemistry and Physiology D-Genomics & Proteomics
- Aggregate Feeding by the Copepods Calanus and Pseudocalanus Controls Carbon Flux Attenuation in the Arctic Shelf Sea During the Productive Period
- (2020) Helga van der Jagt et al. Frontiers in Marine Science
- Sea lice, Lepeophtheirus salmonis (Krøyer 1837), infected Atlantic salmon (Salmo salar L.) are more susceptible to infectious salmon anemia virus
- (2019) Sarah E. Barker et al. PLoS One
- The genome and mRNA transcriptome of the cosmopolitan calanoid copepod Acartia tonsa Dana improve the understanding of copepod genome size evolution
- (2019) Tue Sparholt Jørgensen et al. Genome Biology and Evolution
- Heme biosynthesis and the porphyrias
- (2019) John D. Phillips MOLECULAR GENETICS AND METABOLISM
- Transcriptionally promiscuous “blurry” promoters in Tc1/mariner transposons allow transcription in distantly related genomes
- (2019) Antonio Palazzo et al. Mobile DNA
- Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination
- (2019) Charles J. Underwood et al. CHROMOSOMA
- The Phylogeny and Evolutionary History of Arthropods
- (2019) Gonzalo Giribet et al. CURRENT BIOLOGY
- Predatory efficacy of five locally available copepods on Aedes larvae under laboratory settings: An approach towards bio-control of dengue in Sri Lanka
- (2019) Lahiru Udayanga et al. PLoS One
- Genome-wide survey of cytochrome P450 genes in the salmon louse Lepeophtheirus salmonis (Krøyer, 1837)
- (2019) Joseph L. Humble et al. Parasites & Vectors
- Production, mortality, and infectivity of planktonic larval sea lice, Lepeophtheirus salmonis (Krøyer, 1837): current knowledge and implications for epidemiological modelling
- (2018) A J Brooker et al. ICES JOURNAL OF MARINE SCIENCE
- RNA sequencing reveals distinct gene expression patterns during the development of parasitic larval stages of the salmon louse (Lepeophtheirus salmonis )
- (2018) C Eichner et al. JOURNAL OF FISH DISEASES
- Characterization of three salmon louse ( Lepeophtheirus salmonis) genes with fibronectin II domains expressed by tegumental type 1 glands
- (2018) Ewa Harasimczuk et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus
- (2018) Felipe S. Barreto et al. Nature Ecology & Evolution
- The axolotl genome and the evolution of key tissue formation regulators
- (2018) Sergej Nowoshilow et al. NATURE
- A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences
- (2018) Roy G. Danzmann et al. MOLECULAR GENETICS AND GENOMICS
- Comparative genomics of the major parasitic worms
- (2018) NATURE GENETICS
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Salmon lice treatments and salmon mortality in Norwegian aquaculture: a review
- (2018) Kathy Overton et al. Reviews in Aquaculture
- Comparative genome analysis of programmed DNA elimination in nematodes
- (2017) Jianbin Wang et al. GENOME RESEARCH
- Contribution of Calanus species to the mesozooplankton biomass in the Barents Sea
- (2017) Johanna Myrseth Aarflot et al. ICES JOURNAL OF MARINE SCIENCE
- The major threats to Atlantic salmon in Norway
- (2017) Torbjørn Forseth et al. ICES JOURNAL OF MARINE SCIENCE
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda
- (2017) Seong-il Eyun et al. MOLECULAR BIOLOGY AND EVOLUTION
- New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona
- (2017) Mohammed-Amin Madoui et al. MOLECULAR ECOLOGY
- New concerns raised over value of genome-wide disease studies
- (2017) Ewen Callaway NATURE
- Ionotropic receptors signal host recognition in the salmon louse (Lepeophtheirus salmonis, Copepoda)
- (2017) Anna Z. Komisarczuk et al. PLoS One
- The mechanism (Phe362Tyr mutation) behind resistance in Lepeophtheirus salmonis pre-dates organophosphate use in salmon farming
- (2017) Kiranpreet Kaur et al. Scientific Reports
- Regulation of the host immune system by helminth parasites
- (2016) Rick M. Maizels et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- The Atlantic salmon genome provides insights into rediploidization
- (2016) Sigbjørn Lien et al. NATURE
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
- (2016) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Ensembl comparative genomics resources
- (2016) Javier Herrero et al. Database-The Journal of Biological Databases and Curation
- Inter- and intraspecific variation in body- and genome size in calanoid copepods from temperate and arctic waters
- (2016) Hans Petter Leinaas et al. Ecology and Evolution
- SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
- (2016) Wei Shen et al. PLoS One
- Evolutionary loss of peroxisomes – not limited to parasites
- (2015) Vojtěch Žárský et al. Biology Direct
- Drug resistance in sea lice: a threat to salmonid aquaculture
- (2015) Stian Mørch Aaen et al. TRENDS IN PARASITOLOGY
- Expression of the vault RNA protects cells from undergoing apoptosis
- (2015) Melanie Amort et al. Nature Communications
- A Survey of the ATP-Binding Cassette (ABC) Gene Superfamily in the Salmon Louse (Lepeophtheirus salmonis)
- (2015) Greta Carmona-Antoñanzas et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A common-garden experiment to quantify evolutionary processes in copepods: the case of emamectin benzoate resistance in the parasitic sea louse Lepeophtheirus salmonis
- (2014) Lina Eva Ljungfeldt et al. BMC EVOLUTIONARY BIOLOGY
- Pacific and Atlantic Lepeophtheirus salmonis (Krøyer, 1838) are allopatric subspecies: Lepeophtheirus salmonis salmonis and L. salmonis oncorhynchi subspecies novo
- (2014) Rasmus Skern-Mauritzen et al. BMC GENETICS
- Human-induced evolution caught in action: SNP-array reveals rapid amphi-atlantic spread of pesticide resistance in the salmon ecotoparasite Lepeophtheirus salmonis
- (2014) Francois Besnier et al. BMC GENOMICS
- Risk assessment of the environmental impact of Norwegian Atlantic salmon farming
- (2014) Geir Lasse Taranger et al. ICES JOURNAL OF MARINE SCIENCE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Large, rapidly evolving gene families are at the forefront of host–parasite interactions in Apicomplexa
- (2014) ADAM J REID PARASITOLOGY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Molecular basis for the expression of major vault protein induced by hyperosmotic stress in SW620 human colon cancer cells
- (2013) YUSUKE TAJITSU et al. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
- The Salmon Louse Lepeophtheirus salmonis (Copepoda: Caligidae) Life Cycle Has Only Two Chalimus Stages
- (2013) Lars A. Hamre et al. PLoS One
- New insights into the machinery of blood digestion by ticks
- (2013) Daniel Sojka et al. TRENDS IN PARASITOLOGY
- A genome-wide analysis of annexins from parasitic organisms and their vectors
- (2013) Cinzia Cantacessi et al. Scientific Reports
- Peroxisome Assembly and Functional Diversity in Eukaryotic Microorganisms
- (2012) Laurent Pieuchot et al. Annual Review of Microbiology
- easyRNASeq: a bioconductor package for processing RNA-Seq data
- (2012) N. Delhomme et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity
- (2012) Settu Sridhar et al. BMC GENOMICS
- Horizontal Transfers of Tc1 Elements between Teleost Fishes and Their Vertebrate Parasites, Lampreys
- (2012) Shigehiro Kuraku et al. Genome Biology and Evolution
- The role of major vault protein (MVP) in drug resistance
- (2012) Kinam Park JOURNAL OF CONTROLLED RELEASE
- Platyhelminth Venom Allergen-Like (VAL) proteins: revealing structural diversity, class-specific features and biological associations across the phylum
- (2012) IAIN W. CHALMERS et al. PARASITOLOGY
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Glutathione transferases: a structural perspective
- (2011) Aaron Oakley DRUG METABOLISM REVIEWS
- Genomic Resources for Sea Lice: Analysis of ESTs and Mitochondrial Genomes
- (2011) Motoshige Yasuike et al. MARINE BIOTECHNOLOGY
- MVP and vaults: a role in the radiation response
- (2011) Pedro C Lara et al. Radiation Oncology
- The Ecoresponsive Genome of Daphnia pulex
- (2011) J. K. Colbourne et al. SCIENCE
- Development of a sea anemone toxin as an immunomodulator for therapy of autoimmune diseases
- (2011) Victor Chi et al. TOXICON
- Be different—The diversity of peroxisomes in the animal kingdom
- (2010) M. Islinger et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Peroxisome diversity and evolution
- (2010) T. Gabaldon PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Crustaceans from bitumen clast in Carboniferous glacial diamictite extend fossil record of copepods
- (2010) Paul A. Selden et al. Nature Communications
- A lot about a little dot — lessons learned from Drosophila melanogaster chromosome 4This paper is one of a selection of papers published in this Special Issue, entitled 29th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal’s usual peer review process.
- (2009) Nicole C. Riddle et al. Biochemistry and Cell Biology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- The evolution of heterochiasmy: the role of sexual selection and sperm competition in determining sex-specific recombination rates in eutherian mammals
- (2009) JUDITH E. MANK Genetics Research
- A review of host finding behaviour in the parasitic sea louse,Lepeophtheirus salmonis(Caligidae: Copepoda)
- (2009) A J Mordue (Luntz) et al. JOURNAL OF FISH DISEASES
- Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
- (2009) Steffen Durinck et al. Nature Protocols
- Establishment and characterisation of salmon louse (Lepeophtheirus salmonis (Krøyer 1837)) laboratory strains
- (2009) Lars A. Hamre et al. PARASITOLOGY INTERNATIONAL
- On the role of major vault protein in the resistance of senescent human diploid fibroblasts to apoptosis
- (2008) S J Ryu et al. CELL DEATH AND DIFFERENTIATION
- Vaults and the major vault protein: Novel roles in signal pathway regulation and immunity
- (2008) W. Berger et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Recombination in Interpopulation Hybrids of the Copepod Tigriopus californicus: Release of Beneficial Variation Despite Hybrid Breakdown
- (2008) S. Edmands JOURNAL OF HEREDITY
- Environmental signatures associated with cholera epidemics
- (2008) G. Constantin de Magny et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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