Complete Genome Sequencing of a Novel Gloeobacter Species from a Waterfall Cave in Mexico

A novel thylakoid-less isolate fills a billion-year gap in the evolution of Cyanobacteria

(2021) Nasim Rahmatpour et al.   CURRENT BIOLOGY

Time-resolved comparative molecular evolution of oxygenic photosynthesis

(2021) Thomas Oliver et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterizing the Uncultivated Microbial Minority: towards Understanding the Roles of the Rare Biosphere in Microbial Communities

(2021) Jimmy H. W. Saw   mSystems

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment

(2020) Zhichao Zhou et al.   mSystems

A phylogenetically novel cyanobacterium most closely related to Gloeobacter

(2020) Christen L. Grettenberger et al.   ISME Journal

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

(2020) Francesco Asnicar et al.   Nature Communications

The diversity and distribution of D1 proteins in cyanobacteria

(2020) Kevin J. Sheridan et al.   PHOTOSYNTHESIS RESEARCH

Community-led, integrated, reproducible multi-omics with anvi’o

(2020) A. Murat Eren et al.   Nature Microbiology

The evolution of photosynthesis and aerobic respiration in the cyanobacteria

(2019) Rochelle M. Soo et al.   FREE RADICAL BIOLOGY AND MEDICINE

Photochemistry beyond the red limit in chlorophyll f–containing photosystems

(2018) Dennis J. Nürnberg et al.   SCIENCE

Gloeobacter violaceus: primitive reproductive scheme and its significance

(2018) Gustavo Montejano et al.   PLANT SYSTEMATICS AND EVOLUTION

Early Archean origin of Photosystem II

(2018) Tanai Cardona et al.   Geobiology

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II

(2016) M.-Y. Ho et al.   SCIENCE

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria

(2015) Tanai Cardona et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light

(2014) F. Gan et al.   SCIENCE

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Validation of the Generic NameGloeobacterRippkaet al. 1974, Cyanophyceae

(2013) Jan Mareš et al.   CRYPTOGAMIE ALGOLOGIE

Cultivation and Complete Genome Sequencing of Gloeobacter kilaueensis sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai'i

(2013) Jimmy H. W. Saw et al.   PLoS One

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Oxygen evolution in the thylakoid-lacking cyanobacterium Gloeobacter violaceus PCC 7421

(2008) Kohei Koyama et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS