Computational methods and translational applications for targeted next‐generation sequencing platforms
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Computational methods and translational applications for targeted next‐generation sequencing platforms
Authors
Keywords
-
Journal
GENES CHROMOSOMES & CANCER
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2022-01-23
DOI
10.1002/gcc.23023
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Distribution of KRASG12C Somatic Mutations across Race, Sex, and Cancer Type
- (2021) Amin H. Nassar et al. NEW ENGLAND JOURNAL OF MEDICINE
- A comprehensive Memorial Sloan Kettering Cancer Center real-world data model: Core clinical data elements.
- (2021) Neil J. Shah et al. JOURNAL OF CLINICAL ONCOLOGY
- Clinical and genomic predictors of brain metastases (BM) in non-small cell lung cancer (NSCLC): An AACR Project GENIE analysis.
- (2021) Protiva Rahman et al. JOURNAL OF CLINICAL ONCOLOGY
- Correlation Between Surrogate End Points and Overall Survival in a Multi-institutional Clinicogenomic Cohort of Patients With Non–Small Cell Lung or Colorectal Cancer
- (2021) Kenneth L. Kehl et al. JAMA Network Open
- Implications of Selection Bias Due to Delayed Study Entry in Clinical Genomic Studies
- (2021) Samantha Brown et al. JAMA Oncology
- Cross-Omics: Integrating Genomics with Metabolomics in Clinical Diagnostics
- (2020) Marten H. P. M. Kerkhofs et al. Metabolites
- The FDA approval of pembrolizumab for adult and pediatric patients with tumor mutational burden (TMB) ≥10: a decision centered on empowering patients and their physicians
- (2020) V. Subbiah et al. ANNALS OF ONCOLOGY
- Quantification of aneuploidy in targeted sequencing data using ASCETS
- (2020) Liam F Spurr et al. BIOINFORMATICS
- A Genomic-Pathologic Annotated Risk Model to Predict Recurrence in Early-Stage Lung Adenocarcinoma
- (2020) Gregory D. Jones et al. JAMA Surgery
- Analysis of Plasma Cell-Free DNA by Ultradeep Sequencing in Patients With Stages I to III Colorectal Cancer
- (2019) Thomas Reinert et al. JAMA Oncology
- Development of Genome-Derived Tumor Type Prediction to Inform Clinical Cancer Care
- (2019) Alexander Penson et al. JAMA Oncology
- Genomic and Functional Approaches to Understanding Cancer Aneuploidy
- (2018) Alison M. Taylor et al. CANCER CELL
- Oncogenic Signaling Pathways in The Cancer Genome Atlas
- (2018) Francisco Sanchez-Vega et al. CELL
- Molecular Determinants of Response to Anti–Programmed Cell Death (PD)-1 and Anti–Programmed Death-Ligand 1 (PD-L1) Blockade in Patients With Non–Small-Cell Lung Cancer Profiled With Targeted Next-Generation Sequencing
- (2018) Hira Rizvi et al. JOURNAL OF CLINICAL ONCOLOGY
- Chromosomal instability drives metastasis through a cytosolic DNA response
- (2018) Samuel F. Bakhoum et al. NATURE
- Prevalence of Clonal Hematopoiesis Mutations in Tumor-Only Clinical Genomic Profiling of Solid Tumors
- (2018) Ryan N. Ptashkin et al. JAMA Oncology
- Profiling DNA Methylation Based on Next-Generation Sequencing Approaches: New Insights and Clinical Applications
- (2018) Daniela Barros-Silva et al. Genes
- Widespread Selection for Oncogenic Mutant Allele Imbalance in Cancer
- (2018) Craig M. Bielski et al. CANCER CELL
- Maftools: efficient and comprehensive analysis of somatic variants in cancer
- (2018) Anand Mayakonda et al. GENOME RESEARCH
- Microsatellite Instability Is Associated With the Presence of Lynch Syndrome Pan-Cancer
- (2018) Alicia Latham et al. JOURNAL OF CLINICAL ONCOLOGY
- Mutation Detection in Patients With Advanced Cancer by Universal Sequencing of Cancer-Related Genes in Tumor and Normal DNA vs Guideline-Based Germline Testing
- (2017) Diana Mandelker et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
- (2017) Malachi Griffith et al. NATURE GENETICS
- Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
- (2017) Ahmet Zehir et al. NATURE MEDICINE
- Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy
- (2017) Teresa Davoli et al. SCIENCE
- FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
- (2016) Ronglai Shen et al. NUCLEIC ACIDS RESEARCH
- Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
- (2015) Xiaoyu Chen et al. BIOINFORMATICS
- Discriminating somatic and germline mutations in tumor DNA samples without matching normals
- (2015) Saskia Hiltemann et al. GENOME RESEARCH
- Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT)
- (2015) Donavan T. Cheng et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Proteogenomics from a bioinformatics angle: A growing field
- (2015) Gerben Menschaert et al. MASS SPECTROMETRY REVIEWS
- Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity
- (2015) Matthew T Chang et al. NATURE BIOTECHNOLOGY
- Discovery and saturation analysis of cancer genes across 21 tumour types
- (2014) Michael S. Lawrence et al. NATURE
- Anchored multiplex PCR for targeted next-generation sequencing
- (2014) Zongli Zheng et al. NATURE MEDICINE
- MSIsensor: microsatellite instability detection using paired tumor-normal sequence data
- (2013) Beifang Niu et al. BIOINFORMATICS
- Ethical, Legal, and Counseling Challenges Surrounding the Return of Genetic Results in Oncology
- (2013) Martijn P. Lolkema et al. JOURNAL OF CLINICAL ONCOLOGY
- Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing
- (2013) Garrett M Frampton et al. NATURE BIOTECHNOLOGY
- Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
- (2013) J. Gao et al. Science Signaling
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- MuSiC: Identifying mutational significance in cancer genomes
- (2012) N. D. Dees et al. GENOME RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now