Maftools: efficient and comprehensive analysis of somatic variants in cancer
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Title
Maftools: efficient and comprehensive analysis of somatic variants in cancer
Authors
Keywords
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Journal
GENOME RESEARCH
Volume 28, Issue 11, Pages 1747-1756
Publisher
Cold Spring Harbor Laboratory
Online
2018-10-19
DOI
10.1101/gr.239244.118
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- (2014) Li Ding et al. NATURE REVIEWS GENETICS
- OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes
- (2013) David Tamborero et al. BIOINFORMATICS
- From human genome to cancer genome: The first decade
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- EMu: probabilistic inference of mutational processes and their localization in the cancer genome
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- Comprehensive molecular portraits of human breast tumours
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- The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.
- (2012) Ethan Cerami et al. Cancer Discovery
- PathScan: a tool for discerning mutational significance in groups of putative cancer genes
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- Sodium ion channel mutations in glioblastoma patients correlate with shorter survival
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