Multi‐population puma connectivity could restore genomic diversity to at‐risk coastal populations in California

Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection

(2021) Ellie E Armstrong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Neutral genetic diversity as a useful tool for conservation biology

(2021) Aurora García-Dorado et al.   CONSERVATION GENETICS

First reproductive signs of inbreeding depression in Southern California male mountain lions (Puma concolor)

(2021) Audra A. Huffmeyer et al.   THERIOGENOLOGY

Metapopulation management of a critically endangered marsupial in the age of genomics

(2021) Katherine A. Farquharson et al.   Global Ecology and Conservation

Fine-scale movement decisions by a large carnivore inform conservation planning in human-dominated landscapes

(2020) Justin P. Suraci et al.   LANDSCAPE ECOLOGY

Puma–livestock conflicts in the Americas: a review of the evidence

(2020) Maria de las Mercedes Guerisoli et al.   MAMMAL REVIEW

Minimum habitat thresholds required for conserving mountain lion genetic diversity

(2020) Justin A. Dellinger et al.   Ecology and Evolution

Strongly deleterious mutations are a primary determinant of extinction risk due to inbreeding depression

(2020) Christopher C. Kyriazis et al.   Evolution Letters

Extinction vortex dynamics of top predators isolated by urbanization

(2019) John F. Benson et al.   ECOLOGICAL APPLICATIONS

Survival and competing mortality risks of mountain lions in a major metropolitan area

(2019) John F. Benson et al.   BIOLOGICAL CONSERVATION

Genetic rescue of an isolated African lion population

(2019) Susan M. Miller et al.   CONSERVATION GENETICS

Urbanization impacts apex predator gene flow but not genetic diversity across an urban‐rural divide

(2019) Daryl R. Trumbo et al.   MOLECULAR ECOLOGY

Using Mountain Lion Habitat Selection in Management

(2019) Justin A. Dellinger et al.   JOURNAL OF WILDLIFE MANAGEMENT

Genetic source–sink dynamics among naturally structured and anthropogenically fragmented puma populations

(2018) Kyle D. Gustafson et al.   CONSERVATION GENETICS

Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

(2017) Angela P. Fuentes-Pardo et al.   MOLECULAR ECOLOGY

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study

(2017) Katherine A. Zeller et al.   PLoS One

Call for a Paradigm Shift in the Genetic Management of Fragmented Populations

(2017) Katherine Ralls et al.   Conservation Letters

A single migrant enhances the genetic diversity of an inbred puma population

(2017) Kyle D. Gustafson et al.   Royal Society Open Science

Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci

(2016) R K Waples et al.   HEREDITY

Long-distance dispersal of a subadult male cougar from South Dakota to Connecticut documented with DNA evidence

(2016) Jason E. Hawley et al.   JOURNAL OF MAMMALOGY

Spatial ecology of jaguars, pumas, and ocelots: a review of the state of knowledge

(2016) Noa Gonzalez-Borrajo et al.   MAMMAL REVIEW

Interactions between demography, genetics, and landscape connectivity increase extinction probability for a small population of large carnivores in a major metropolitan area

(2016) John F. Benson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment

(2016) Tim Newbold et al.   SCIENCE

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Survival and Mortality of Pumas (Puma concolor) in a Fragmented, Urbanizing Landscape

(2015) T. Winston Vickers et al.   PLoS One

Individual Behaviors Dominate the Dynamics of an Urban Mountain Lion Population Isolated by Roads

(2014) Seth P.D. Riley et al.   CURRENT BIOLOGY

Fractured Genetic Connectivity Threatens a Southern California Puma (Puma concolor) Population

(2014) Holly B. Ernest et al.   PLoS One

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Three Pathogens in Sympatric Populations of Pumas, Bobcats, and Domestic Cats: Implications for Infectious Disease Transmission

(2012) Sarah N. Bevins et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Predicting the Probability of Outbreeding Depression

(2011) RICHARD FRANKHAM et al.   CONSERVATION BIOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Win-Win for Wind and Wildlife: A Vision to Facilitate Sustainable Development

(2011) Joseph M. Kiesecker et al.   PLoS One

Interfacing models of wildlife habitat and human development to predict the future distribution of puma habitat

(2010) CHRISTOPHER L. BURDETT et al.   Ecosphere

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS