Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis

Global warming is causing a more pronounced dip in marine species richness around the equator

(2021) Chhaya Chaudhary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving the spatial distributions of Dipturus intermedius and Dipturus batis—the two taxa formerly known as the ‘common skate’

(2021) Maisie Bache-Jeffreys et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Recent responses to climate change reveal the drivers of species extinction and survival

(2020) Cristian Román-Palacios et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ocean circulation causes the largest freshening event for 120 years in eastern subpolar North Atlantic

(2020) N. Penny Holliday et al.   Nature Communications

Spatio-temporal genetic tagging of a cosmopolitan planktivorous shark provides insight to gene flow, temporal variation and site-specific re-encounters

(2020) Lilian Lieber et al.   Scientific Reports

Genomic analysis reveals neutral and adaptive patterns that challenge the current management regime for East Atlantic cod Gadus morhua L

(2020) Torild Johansen et al.   Evolutionary Applications

Distribution and thermal niche of the common skate species complex in the north-east Atlantic

(2020) M Frost et al.   MARINE ECOLOGY PROGRESS SERIES

Ocean acidification and warming affect skeletal mineralization in a marine fish

(2019) Valentina Di Santo   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acid-base adjustments and first evidence of denticle corrosion caused by ocean acidification conditions in a demersal shark species

(2019) Jacqueline Dziergwa et al.   Scientific Reports

Transatlantic movement in porbeagle sharks, Lamna nasus

(2018) Luke W.J. Cameron et al.   FISHERIES RESEARCH

Spatial versus temporal structure: Implications of inter-haul variation and relatedness in the North-east Atlantic spurdog Squalus acanthias

(2018) James Thorburn et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates

(2018) Yuichiro Hara et al.   Nature Ecology & Evolution

Estimating effective population size of large marine populations, is it feasible?

(2018) Florianne Marandel et al.   FISH AND FISHERIES

Elevated trawling inside protected areas undermines conservation outcomes in a global fishing hot spot

(2018) Manuel Dureuil et al.   SCIENCE

StructureSelector : A web-based software to select and visualize the optimal number of clusters using multiple methods

(2017) Yu-Long Li et al.   Molecular Ecology Resources

The computer program structure for assigning individuals to populations: easy to use but easier to misuse

(2017) Jinliang Wang   Molecular Ecology Resources

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci

(2016) R K Waples et al.   HEREDITY

Inferring contemporary and historical genetic connectivity from juveniles

(2016) Pierre Feutry et al.   MOLECULAR ECOLOGY

SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate

(2016) Gretchen H. Roffler et al.   Molecular Ecology Resources

High performance computation of landscape genomic models including local indicators of spatial association

(2016) S. Stucki et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Anthropogenic climate change drives shift and shuffle in North Atlantic phytoplankton communities

(2016) Andrew D. Barton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Close-Kin Mark-Recapture

(2016) Mark V. Bravington et al.   STATISTICAL SCIENCE

Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture

(2016) Mark V. Bravington et al.   Nature Communications

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

A statistical framework to explore ontogenetic growth variation among individuals and populations: a marine fish example

(2015) John R. Morrongiello et al.   ECOLOGICAL MONOGRAPHS

Seascape genetics of saithe (Pollachius virens) across the North Atlantic using single nucleotide polymorphisms

(2015) Atal Saha et al.   ICES JOURNAL OF MARINE SCIENCE

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Ocean acidification and global warming impair shark hunting behaviour and growth

(2015) Jennifer C. A. Pistevos et al.   Scientific Reports

Site fidelity, survival and conservation options for the threatened flapper skate(Dipturus cf. intermedia)

(2014) Francis Neat et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Genetic analyses of ling (Molva molva) in the Northeast Atlantic reveal patterns relevant to stock assessments and management advice

(2014) Enrique Blanco Gonzalez et al.   ICES JOURNAL OF MARINE SCIENCE

PopGenReport: simplifying basic population genetic analyses in R

(2014) Aaron T. Adamack et al.   Methods in Ecology and Evolution

Extinction risk and conservation of the world’s sharks and rays

(2014) Nicholas K Dulvy et al.   eLife

A product of its environment: the epaulette shark (Hemiscyllium ocellatum) exhibits physiological tolerance to elevated environmental CO2

(2014) D. D. U. Heinrich et al.   Conservation Physiology

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Lengths at maturity and conversion factors for skates (Rajidae) around the British Isles, with an analysis of data in the literature

(2012) S. R. McCully et al.   ICES JOURNAL OF MARINE SCIENCE

Population genetics of Australian white sharks reveals fine-scale spatial structure, transoceanic dispersal events and low effective population sizes

(2012) DC Blower et al.   MARINE ECOLOGY PROGRESS SERIES

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Population Structure and Phylogeography of the Short-Tailed Stingray, Dasyatis brevicaudata (Hutton 1875), in the Southern Hemisphere

(2011) Agnès Le Port et al.   JOURNAL OF HEREDITY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis)

(2010) A. M. Griffiths et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Taxonomic confusion and market mislabelling of threatened skates: important consequences for their conservation status

(2009) Samuel P. Iglésias et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

Movement and behaviour patterns of the critically endangered common skate Dipturus batis revealed by electronic tagging

(2009) Victoria J. Wearmouth et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources