Inhalable Antibiotic Resistome from Wastewater Treatment Plants to Urban Areas: Bacterial Hosts, Dissemination Risks, and Source Contributions

Intracellular and Extracellular Antibiotic Resistance Genes in Airborne PM2.5 for Respiratory Exposure in Urban Areas

(2021) Tangtian He et al.   Environmental Science & Technology Letters

Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes

(2021) Connor L. Brown et al.   Scientific Reports

An omics-based framework for assessing the health risk of antimicrobial resistance genes

(2021) An-Ni Zhang et al.   Nature Communications

Airborne transmission as an integral environmental dimension of antimicrobial resistance through the “One Health” lens

(2021) Ling Jin et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Municipal Solid Waste Treatment System Increases Ambient Airborne Bacteria and Antibiotic Resistance Genes

(2020) Linyun Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Online searching platform for antibiotic resistome in bacterial tree of life and global habitats

(2020) An Ni Zhang et al.   FEMS MICROBIOLOGY ECOLOGY

Winter is coming – Impact of temperature on the variation of beta-lactamase and mcr genes in a wastewater treatment plant

(2020) Laura Schages et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic Profiles of Antibiotic Resistance Genes in Activated Sludge, Dewatered Sludge and Bioaerosols

(2020) Il Han et al.   Water

Characteristics of and variation in airborne ARGs among urban hospitals and adjacent urban and suburban communities: A metagenomic approach

(2020) Peng He et al.   ENVIRONMENT INTERNATIONAL

NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes

(2019) G. A. Arango-Argoty et al.   Microbiome

Characteristics of submicron aerosols produced during aeration in wastewater treatment

(2019) Yunping Han et al.   SCIENCE OF THE TOTAL ENVIRONMENT

OUP accepted manuscript

(2018)   BIOINFORMATICS

Tracking the Sources of Antibiotic Resistance Genes in an Urban Stream during Wet Weather using Shotgun Metagenomic Analyses

(2018) Darshan Baral et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

(2018) Pawel S Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Metagenomic profiling of ARGs in airborne particulate matters during a severe smog event

(2018) Jialin Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Seasonal Disparities in Airborne Bacteria and Associated Antibiotic Resistance Genes in PM2.5 between Urban and Rural Sites

(2018) Jiawen Xie et al.   Environmental Science & Technology Letters

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification

(2018) Li-Guan Li et al.   Microbiome

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

(2018) Gustavo Arango-Argoty et al.   Microbiome

Characterization of airborne antibiotic resistance genes from typical bioaerosol emission sources in the urban environment using metagenomic approach

(2018) Ying Yang et al.   CHEMOSPHERE

Global Survey of Antibiotic Resistance Genes in Air

(2018) Jing Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

Bacteria and Antibiotic Resistance Genes (ARGs) in PM2.5 from China: Implications for Human Exposure

(2018) Jiawen Xie et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antibiotic Resistance Genes and Associated Microbial Community Conditions in Aging Landfill Systems

(2017) Dong Wu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The Prevalence of Integrons as the Carrier of Antibiotic Resistance Genes in Natural and Man-Made Environments

(2017) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Impact of anthropogenic activities on the dissemination of antibiotic resistance across ecological boundaries

(2017) Vijay Tripathi et al.   Essays in Biochemistry

Quantification of multi-antibiotic resistant opportunistic pathogenic bacteria in bioaerosols in and around a pharmaceutical wastewater treatment plant

(2017) Mengyu Zhang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Metagenomic Analysis Revealing Antibiotic Resistance Genes (ARGs) and Their Genetic Compartments in the Tibetan Environment

(2016) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

Airborne bacterial contaminations in typical Chinese wet market with live poultry trade

(2016) Xin-Lei Gao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Propagation of New Delhi Metallo-β-lactamase Genes (blaNDM-1) from a Wastewater Treatment Plant to Its Receiving River

(2016) Fengxia Yang et al.   Environmental Science & Technology Letters

The structure and diversity of human, animal and environmental resistomes

(2016) Chandan Pal et al.   Microbiome

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

(2016) Gustavo Arango-Argoty et al.   PLoS One

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Increased levels of antibiotic resistance in urban stream of Jiulongjiang River, China

(2015) Wei-Ying Ouyang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Profile and Fate of Bacterial Pathogens in Sewage Treatment Plants Revealed by High-Throughput Metagenomic Approach

(2015) Bing Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Optimized DNA extraction and metagenomic sequencing of airborne microbial communities

(2015) Wenjun Jiang et al.   Nature Protocols

Inhalable Microorganisms in Beijing’s PM2.5 and PM10 Pollutants during a Severe Smog Event

(2014) Chen Cao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

What is a resistance gene? Ranking risk in resistomes

(2014) José L. Martínez et al.   NATURE REVIEWS MICROBIOLOGY

Tetracycline Resistance and Class 1 Integron Genes Associated with Indoor and Outdoor Aerosols

(2013) Alison L. Ling et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic Profiles of Antibiotic Resistance Genes (ARGs) between Human Impacted Estuary and Deep Ocean Sediments

(2013) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Temporal variability and effect of environmental variables on airborne bacterial communities in an urban area of Northern Italy

(2012) Valentina Bertolini et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Antibiotic resistance gene abundances associated with antibiotics and heavy metals in animal manures and agricultural soils adjacent to feedlots in Shanghai; China

(2012) Xiuling Ji et al.   JOURNAL OF HAZARDOUS MATERIALS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY