Integrative physiological, transcriptome, and metabolome analysis reveals the effects of nitrogen sufficiency and deficiency conditions in apple leaves and roots

Exogenous application of xanthine and uric acid and nucleobase-ascorbate transporter MdNAT7 expression regulate salinity tolerance in apple

(2021) Tingting Sun et al.   BMC PLANT BIOLOGY

Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice

(2020) Mutsumi Watanabe et al.   PLANT CELL AND ENVIRONMENT

OUP accepted manuscript

(2018)   BIOINFORMATICS

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Analysis of coffee ( Coffea arabica L.) performance in relation to radiation level and rate of nitrogen supply II. Uptake and distribution of nitrogen, leaf photosynthesis and first bean yields

(2018) Adugna Debela Bote et al.   EUROPEAN JOURNAL OF AGRONOMY

Photosynthetic characteristics and metabolic analyses of two soybean genotypes revealed adaptive strategies to low-nitrogen stress

(2018) Mingxia Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Carbon/Nitrogen Metabolic Balance: Lessons from Cyanobacteria

(2018) Cheng-Cai Zhang et al.   TRENDS IN PLANT SCIENCE

Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies

(2017) Kamlesh K. Meena et al.   Frontiers in Plant Science

Transcriptomic response of durum wheat to nitrogen starvation

(2017) Pasquale L. Curci et al.   Scientific Reports

Genetic approaches to enhancing nitrogen-use efficiency (NUE) in cereals: challenges and future directions

(2015) Trevor Garnett et al.   FUNCTIONAL PLANT BIOLOGY

Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses

(2015) Etienne A. Thévenot et al.   JOURNAL OF PROTEOME RESEARCH

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Transcriptomic analysis of nitrogen starvation- and cultivar-specific leaf senescence in winter oilseed rape ( Brassica napus L.)

(2015) Fabian Koeslin-Findeklee et al.   PLANT SCIENCE

Metabolomic profiling from leaves and roots of tomato ( Solanum lycopersicum L.) plants grown under nitrogen, phosphorus or potassium-deficient condition

(2015) Jwakyung Sung et al.   PLANT SCIENCE

Global poplar root and leaf transcriptomes reveal links between growth and stress responses under nitrogen starvation and excess

(2015) Jie Luo et al.   TREE PHYSIOLOGY

The effect of nitrate assimilation deficiency on the carbon and nitrogen status of Arabidopsis thaliana plants

(2014) Plínio Rodrigues Santos-Filho et al.   AMINO ACIDS

Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

(2014) Malleswari Gelli et al.   BMC GENOMICS

Nitrogen-use efficiency in maize (Zea mays L.): from 'omics' studies to metabolic modelling

(2014) M. Simons et al.   JOURNAL OF EXPERIMENTAL BOTANY

He-Ne laser treatment improves the photosynthetic efficiency of wheat exposed to enhanced UV-B radiation

(2014) Huize Chen et al.   LASER PHYSICS

Nitrogen supply affects anthocyanin biosynthetic and regulatory genes in grapevine cv. Cabernet-Sauvignon berries

(2014) Eric Soubeyrand et al.   PHYTOCHEMISTRY

Flavonoids in plant rhizospheres: secretion, fate and their effects on biological communication

(2014) Akifumi Sugiyama et al.   Plant Biotechnology

Selection of low-variance expressed Malus x domestica (apple) genes for use as quantitative PCR reference genes (housekeepers)

(2014) Judith Bowen et al.   Tree Genetics & Genomes

Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses

(2013) Sabrina Humbert et al.   BMC GENOMICS

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

Plant Nitrogen Assimilation and Use Efficiency

(2012) Guohua Xu et al.   Annual Review of Plant Biology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Identification of genes associated with nitrogen-use efficiency by genome-wide transcriptional analysis of two soybean genotypes

(2011) Qing N Hao et al.   BMC GENOMICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Metabolomics and Food Processing: From Semolina to Pasta

(2011) Romina Beleggia et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation

(2011) A. Krapp et al.   PLANT PHYSIOLOGY

Nitrogen use efficiency: re-consideration of the bioengineering approach

(2010) Elizabeth K. Brauer et al.   Botany

Synergetic effects of nitrogen depletion, temperature, and light on the content of phenolic compounds and gene expression in leaves of tomato

(2010) Trond Løvdal et al.   PHYTOCHEMISTRY

Nitrogen nutrition of poplar trees

(2010) H. Rennenberg et al.   PLANT BIOLOGY

Nitrogen balance in forest soils: nutritional limitation of plants under climate change stresses

(2009) H. Rennenberg et al.   PLANT BIOLOGY

Reducing environmental risk by improving N management in intensive Chinese agricultural systems

(2009) X.-T. Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of nitrogen deficiency on leaf photosynthesis, carbohydrate status and biomass production in two olive cultivars ‘Meski’ and ‘Koroneiki’

(2009) O. Boussadia et al.   SCIENTIA HORTICULTURAE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY