Nitrifiers drive successions of particulate organic matter and microbial community composition in a starved macrocosm

Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean

(2020) Yao Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal Variations of Water Quality in the Vostok Bay, Peter the Great Gulf, the Sea of Japan

(2020) N. I. Grigoryeva et al.   Water Resources

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought

(2020) Joana Séneca et al.   ISME Journal

Laterally Transported Particles From Margins Serve as a Major Carbon and Energy Source for Dark Ocean Ecosystems

(2020) Jiaming Shen et al.   GEOPHYSICAL RESEARCH LETTERS

Molecular characteristics of microbially mediated transformations of Synechococcus ‐derived dissolved organic matter as revealed by incubation experiments

(2019) Qiang Zheng et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis exhibited the co-metabolism of polycyclic aromatic hydrocarbons by bacterial community from estuarine sediment

(2019) Shuangfei Zhang et al.   ENVIRONMENT INTERNATIONAL

Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

(2019) Barbara Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

Developing numeric nutrient criteria for the Yangtze River Estuary and adjacent waters in China

(2019) Fuxia Yang et al.   JOURNAL OF HYDROLOGY

Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession

(2018) Xiaoqin Wu et al.   Frontiers in Microbiology

Unveiling the enigma of refractory carbon in the ocean

(2018) Nianzhi Jiao et al.   National Science Review

Effects of a Commercial Microbial Agent on the Bacterial Communities in Shrimp Culture System

(2018) Zidan Liu et al.   Frontiers in Microbiology

Deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation

(2017) Marta Sebastián et al.   ENVIRONMENTAL MICROBIOLOGY

Warming enhances old organic carbon decomposition through altering functional microbial communities

(2017) Lei Cheng et al.   ISME Journal

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

(2017) Maria G. Pachiadaki et al.   SCIENCE

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

(2017) Zachary Landry et al.   mBio

Optical properties of dissolved organic matter (DOM): Effects of biological and photolytic degradation

(2016) Angela M. Hansen et al.   LIMNOLOGY AND OCEANOGRAPHY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

DOM composition and transformation in boreal forest soils: The effects of temperature and organic-horizon decomposition state

(2016) Jonathan A. O'Donnell et al.   Journal of Geophysical Research-Biogeosciences

Linking biochemical properties of particles to particle-attached and free-living bacterial community structure along the particle density gradient from freshwater to open ocean

(2016) Yao Zhang et al.   Journal of Geophysical Research-Biogeosciences

Dissolved organic matter composition and photochemical transformations in the northern North Pacific Ocean

(2015) Patricia. M. Medeiros et al.   GEOPHYSICAL RESEARCH LETTERS

Prokaryotic responses to hydrostatic pressure in the ocean - a review

(2013) Christian Tamburini et al.   ENVIRONMENTAL MICROBIOLOGY

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial degradation of aromatic compounds — from one strategy to four

(2011) Georg Fuchs et al.   NATURE REVIEWS MICROBIOLOGY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Assimilation of marine extracellular polymeric substances by deep-sea prokaryotes in the NW Mediterranean Sea

(2011) Mehdi Boutrif et al.   Environmental Microbiology Reports

Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior

(2010) Thomas Reinthaler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments

(2009) JA Raven   AQUATIC MICROBIAL ECOLOGY

Abyssal food limitation, ecosystem structure and climate change

(2008) C SMITH et al.   TRENDS IN ECOLOGY & EVOLUTION