Reconstruction of Hyper‐Thermostable Ancestral L‐Amino Acid Oxidase to Perform Deracemization to D‐Amino Acids

Ancestral sequence reconstruction for protein engineers

(2021) Matthew A. Spence et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining

(2021) Sayaka Sugiura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

D-amino acids in foods

(2020) Giorgia Letizia Marcone et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Advances in Enzymatic Synthesis of D-Amino Acids

(2020) Loredano Pollegioni et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bioinformatic Analysis of the Flavin-Dependent Amine Oxidase Superfamily: Adaptations for Substrate Specificity and Catalytic Diversity

(2020) Margarita A. Tararina et al.   JOURNAL OF MOLECULAR BIOLOGY

AirID, a novel proximity biotinylation enzyme, for analysis of protein-protein interactions

(2020) Kohki Kido et al.   eLife

Mechanistic insights into the dual activities of the single active site of l-lysine oxidase/monooxygenase from Pseudomonas sp. AIU 813

(2020) Duangthip Trisrivirat et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties

(2020) Tomoharu Motoyama et al.   BIOCHEMISTRY

Ancestral sequence reconstruction produces thermally stable enzymes with mesophilic enzyme-like catalytic properties

(2020) Ryutaro Furukawa et al.   Scientific Reports

Recombinant expression of an l ‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation

(2020) Marc Christian Heß et al.   MicrobiologyOpen

Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids

(2020) Shogo Nakano et al.   Communications Chemistry

Properties of L-amino acid deaminase: en route to optimize bioconversion reactions

(2019) Paolo Motta et al.   BIOCHIMIE

Following the Evolutionary Track of a Highly Specific L-Arginine Oxidase by Reconstruction and Biochemical Analysis of Ancestral and Native Enzymes

(2019) Shogo Nakano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production of α‐Ketoisocaproate and α‐Keto‐β‐Methylvalerate by Engineered L‐Amino Acid Deaminase

(2019) Yuxiang Yuan et al.   ChemCatChem

Deracemization and Stereoinversion to Aromatic D-Amino Acid Derivatives with Ancestral L-Amino Acid Oxidase

(2019) Shogo Nakano et al.   ACS Catalysis

Enzymatic asymmetric synthesis of chiral amino acids

(2018) Ya-Ping Xue et al.   CHEMICAL SOCIETY REVIEWS

Biotechnological and protein-engineering implications of ancestral protein resurrection

(2018) Valeria A Risso et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Directed -in vitro- evolution of Precambrian and extant Rubiscos

(2018) Bernardo J. Gomez-Fernandez et al.   Scientific Reports

Ligand complex structures of l -amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 and its conformational change

(2018) Dohyun Im et al.   FEBS Open Bio

One-Pot Synthesis of d-Halotryptophans by Dynamic Stereoinversion Using a Specific l-Amino Acid Oxidase

(2018) Christian Schnepel et al.   ACS Catalysis

Single-Biocatalyst Synthesis of Enantiopured-Arylalanines Exploiting an Engineeredd-Amino Acid Dehydrogenase

(2016) Fabio Parmeggiani et al.   ADVANCED SYNTHESIS & CATALYSIS

Recombinant expression and characterization of a l-amino acid oxidase from the fungus Rhizoctonia solani

(2016) Katharina Hahn et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro approach to protein engineering

(2016) Y. Gumulya et al.   BIOCHEMICAL JOURNAL

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees

(2016) Kazunori D. Yamada et al.   BIOINFORMATICS

l -Arginine oxidase from Pseudomonas sp. TPU 7192: Characterization, gene cloning, heterologous expression, and application to l -arginine determination

(2016) Daisuke Matsui et al.   ENZYME AND MICROBIAL TECHNOLOGY

Biosynthesis of Violacein, Structure and Function of l-Tryptophan Oxidase VioA fromChromobacterium violaceum

(2016) Janis J. Füller et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Unusual Amino Acids in Medicinal Chemistry

(2016) Mark A. T. Blaskovich   JOURNAL OF MEDICINAL CHEMISTRY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Engineering of phenylalanine ammonia lyase from Rhodotorula graminis for the enhanced synthesis of unnatural l-amino acids

(2016) Ian Rowles et al.   TETRAHEDRON

Synthesis ofD- andL-Phenylalanine Derivatives by Phenylalanine Ammonia Lyases: A Multienzymatic Cascade Process

(2015) Fabio Parmeggiani et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Production of phenylpyruvic acid from l-phenylalanine using an l-amino acid deaminase from Proteus mirabilis: comparison of enzymatic and whole-cell biotransformation approaches

(2015) Ying Hou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mutational and crystallographic analysis of l -amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813: Interconversion between oxidase and monooxygenase activities

(2014) Daisuke Matsui et al.   FEBS Open Bio

l-Amino acid oxidase as biocatalyst: a dream too far?

(2013) Loredano Pollegioni et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bioconversion of l-glutamic acid to α-ketoglutaric acid by an immobilized whole-cell biocatalyst expressing l-amino acid deaminase from Proteus mirabilis

(2013) Gazi Sakir Hossain et al.   JOURNAL OF BIOTECHNOLOGY

Experimental evidence for the thermophilicity of ancestral life

(2013) S. Akanuma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Improved Racemase/Acylase Biotransformation for the Preparation of Enantiomerically Pure Amino Acids

(2012) Scott Baxter et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY