Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining

Ancestral sequence reconstruction for protein engineers

(2021) Matthew A. Spence et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Bioinformatic Analysis of the Flavin-Dependent Amine Oxidase Superfamily: Adaptations for Substrate Specificity and Catalytic Diversity

(2020) Margarita A. Tararina et al.   JOURNAL OF MOLECULAR BIOLOGY

AirID, a novel proximity biotinylation enzyme, for analysis of protein-protein interactions

(2020) Kohki Kido et al.   eLife

Mechanistic insights into the dual activities of the single active site of l-lysine oxidase/monooxygenase from Pseudomonas sp. AIU 813

(2020) Duangthip Trisrivirat et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties

(2020) Tomoharu Motoyama et al.   BIOCHEMISTRY

Structural basis of strict substrate recognition of l ‐lysine α‐oxidase from Trichoderma viride

(2020) Hiroki Kondo et al.   PROTEIN SCIENCE

Ancestral sequence reconstruction produces thermally stable enzymes with mesophilic enzyme-like catalytic properties

(2020) Ryutaro Furukawa et al.   Scientific Reports

Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids

(2020) Shogo Nakano et al.   Communications Chemistry

Properties of L-amino acid deaminase: en route to optimize bioconversion reactions

(2019) Paolo Motta et al.   BIOCHIMIE

One-Pot Biocatalytic Synthesis of Substituted d-Tryptophans from Indoles Enabled by an Engineered Aminotransferase

(2019) Fabio Parmeggiani et al.   ACS Catalysis

Following the Evolutionary Track of a Highly Specific L-Arginine Oxidase by Reconstruction and Biochemical Analysis of Ancestral and Native Enzymes

(2019) Shogo Nakano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative review of the recent enzymatic methods used for selective assay of l-Lysine

(2019) Kimiyasu Isobe et al.   ANALYTICAL BIOCHEMISTRY

Deracemization and Stereoinversion to Aromatic D-Amino Acid Derivatives with Ancestral L-Amino Acid Oxidase

(2019) Shogo Nakano et al.   ACS Catalysis

Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data

(2018) Shogo Nakano et al.   BIOCHEMISTRY

Enzymatic asymmetric synthesis of chiral amino acids

(2018) Ya-Ping Xue et al.   CHEMICAL SOCIETY REVIEWS

Ligand complex structures of l -amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 and its conformational change

(2018) Dohyun Im et al.   FEBS Open Bio

Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis

(2018) Hiroki Yamaguchi et al.   JOURNAL OF BIOCHEMISTRY

Recombinant expression and characterization of a l-amino acid oxidase from the fungus Rhizoctonia solani

(2016) Katharina Hahn et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro approach to protein engineering

(2016) Y. Gumulya et al.   BIOCHEMICAL JOURNAL

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees

(2016) Kazunori D. Yamada et al.   BIOINFORMATICS

Ancestral protein reconstruction: techniques and applications

(2016) Rainer Merkl et al.   BIOLOGICAL CHEMISTRY

l -Arginine oxidase from Pseudomonas sp. TPU 7192: Characterization, gene cloning, heterologous expression, and application to l -arginine determination

(2016) Daisuke Matsui et al.   ENZYME AND MICROBIAL TECHNOLOGY

Biosynthesis of Violacein, Structure and Function of l-Tryptophan Oxidase VioA fromChromobacterium violaceum

(2016) Janis J. Füller et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, L-lysine  -oxidase from Trichoderma viride

(2015) M. Amano et al.   JOURNAL OF BIOCHEMISTRY

Mutational and crystallographic analysis of l -amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813: Interconversion between oxidase and monooxygenase activities

(2014) Daisuke Matsui et al.   FEBS Open Bio

Selective tryptophan determination using tryptophan oxidases involved in bis-indole antibiotic biosynthesis

(2013) Masafumi Kameya et al.   ANALYTICAL BIOCHEMISTRY

l-Amino acid oxidases from microbial sources: types, properties, functions, and applications

(2013) Gazi Sakir Hossain et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

l-Amino acid oxidase as biocatalyst: a dream too far?

(2013) Loredano Pollegioni et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in l-lysine ε-oxidase from Marinomonas mediterranea

(2013) Seiji Okazaki et al.   JOURNAL OF BIOCHEMISTRY

Characterization and application of aminoamide-oxidizing enzyme from Aspergillus carbonarius AIU 205

(2013) Asami Sugawara et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Experimental evidence for the thermophilicity of ancestral life

(2013) S. Akanuma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Improved Racemase/Acylase Biotransformation for the Preparation of Enantiomerically Pure Amino Acids

(2012) Scott Baxter et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Arg305 of Streptomyces l-glutamate oxidase plays a crucial role for substrate recognition

(2011) Tomohiro Utsumi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Oxygen Reactivity in Flavoenzymes: Context Matters

(2011) Claudia A. McDonald et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Enzyme Promiscuity: A Mechanistic and Evolutionary Perspective

(2010) Olga Khersonsky and Dan S. Tawfik   Annual Review of Biochemistry

O2Reactivity of Flavoproteins

(2010) Jan Saam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Consensus Protein Design without Phylogenetic Bias

(2010) Christian Jäckel et al.   JOURNAL OF MOLECULAR BIOLOGY

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

Structural characterization of l-glutamate oxidase fromStreptomycessp. X-119-6

(2009) Jiro Arima et al.   FEBS Journal

The macromolecule with antimicrobial activity synthesized by Pseudoalteromonas luteoviolacea strains is an l-amino acid oxidase

(2008) Daniel Gómez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY