Rhizosphere analysis of field-grown Panax ginseng with different degrees of red skin provides the basis for preventing red skin syndrome

An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR

(2020) Shi-qi An et al.   BMC MICROBIOLOGY

Microbial Community Changes in the Rhizosphere Soil of Healthy and Rusty Panax ginseng and Discovery of Pivotal Fungal Genera Associated with Rusty Roots

(2020) Xuemin Wei et al.   Biomed Research International

Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils

(2020) Anastasia A. Ivanova et al.   PLoS One

Network analysis reveals the strengthening of microbial interaction in biological soil crust development in the Mu Us Sandy Land, northwestern China

(2020) Hong Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biological fertilizer containing Bacillus subtilis BY-2 for control of Sclerotinia sclerotiorum on oilseed rape

(2020) Yinshui Li et al.   CROP PROTECTION

Evolutionary Timeline and Genomic Plasticity Underlying the Lifestyle Diversity in Rhizobiales

(2020) Sishuo Wang et al.   mSystems

Transcriptome analysis of field-grown Asian ginseng provides clues to environmental conditions and developmental mechanisms related to red skin root syndrome

(2020) Li Gong et al.   INDUSTRIAL CROPS AND PRODUCTS

Long-term high-P fertilizer input decreased the total bacterial diversity but not phoD-harboring bacteria in wheat rhizosphere soil with available-P deficiency

(2020) Jinshan Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative analysis of rhizosphere soil physiochemical characteristics and microbial communities between rusty and healthy ginseng root

(2020) Xingbo Bian et al.   Scientific Reports

Lead contamination alters enzyme activities and microbial composition in the rhizosphere soil of the hyperaccumulator Pogonatherum crinitum

(2020) Xiao-long Hou et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Taxonomy of fungal complex causing red-skin root of Panax ginseng in China

(2019) Xiao H. Lu et al.   Journal of Ginseng Research

Analysis of rhizosphere bacterial and fungal communities associated with rusty root disease of Panax ginseng

(2019) Qiuxia Wang et al.   APPLIED SOIL ECOLOGY

Deciphering Microbiome Related to Rusty Roots of Panax ginseng and Evaluation of Antagonists Against Pathogenic Ilyonectria

(2019) Defei Liu et al.   Frontiers in Microbiology

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Fomesafen impacts bacterial communities and enzyme activities in the rhizosphere

(2019) Haiyan Hu et al.   ENVIRONMENTAL POLLUTION

Short-term impact of fire-deposited charcoal on soil microbial community abundance and composition in a subtropical plantation in China

(2019) Yuzhe Wang et al.   GEODERMA

Biological control tobacco bacterial wilt and black shank and root colonization by bio-organic fertilizer containing bacterium Pseudomonas aeruginosa NXHG29

(2018) Li Ma et al.   APPLIED SOIL ECOLOGY

Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture

(2018) Sushanto Gouda et al.   MICROBIOLOGICAL RESEARCH

Responses of fungal–bacterial community and network to organic inputs vary among different spatial habitats in soil

(2018) Wei Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cylindrocarpon destructans/Ilyonectria radicicola -species complex: Causative agent of ginseng root-rot disease and rusty symptoms

(2018) Mohamed El-Agamy Farh et al.   Journal of Ginseng Research

Effects of phenolic acids from ginseng rhizosphere on soil fungi structure, richness and diversity in consecutive monoculturing of ginseng

(2018) Zibo Li et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Responses of soil organic carbon decomposition and microbial community to the addition of plant residues with different C:N ratio

(2017) Xiao Liang et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Exploring the microbiome of healthy and diseased peri-implant sites using Illumina sequencing

(2017) Ignacio Sanz-Martin et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Patterns and drivers of fungal diversity along an altitudinal gradient on Mount Gongga, China

(2017) Jianqing Tian et al.   JOURNAL OF SOILS AND SEDIMENTS

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Changes in element accumulation, phenolic metabolism, and antioxidative enzyme activities in the red-skin roots of Panax ginseng

(2017) Ying Zhou et al.   Journal of Ginseng Research

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Microbial community composition is related to soil biological and chemical properties and bacterial wilt outbreak

(2017) Rui Wang et al.   Scientific Reports

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

(2016) Yan Yan et al.   ISME Journal

Ecological succession reveals potential signatures of marine–terrestrial transition in salt marsh fungal communities

(2016) Francisco Dini-Andreote et al.   ISME Journal

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

First Report of Ilyonectria robusta Causing Rusty Root of Asian Ginseng in China

(2015) X. H. Lu et al.   PLANT DISEASE

Generic concepts in Nectriaceae

(2015) L. Lombard et al.   STUDIES IN MYCOLOGY

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

Simplicillium chinense: a biological control agent against plant parasitic nematodes

(2013) Di Zhao et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Enzymes Hydrolyzing Structural Components and Ferrous Ion Cause Rusty-root Symptom on Ginseng (Panax ginseng)

(2011) Chanyong Lee   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in Northeast China

(2010) Ju-Pei Shen et al.   APPLIED SOIL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Rhizosphere chemical dialogues: plant–microbe interactions

(2009) Dayakar V Badri et al.   CURRENT OPINION IN BIOTECHNOLOGY

Extremotolerance in fungi: evolution on the edge

(2009) Cene Gostinčar et al.   FEMS MICROBIOLOGY ECOLOGY

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

(2009) Hans Lambers et al.   PLANT AND SOIL

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY

Molecular and biochemical characterization of defense responses in ginseng (Panax quinquefolius) roots challenged with Fusarium equiseti

(2008) Rubella S. Goswami et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY