Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
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Title
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
Authors
Keywords
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Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-11-18
DOI
10.1186/s12864-021-08162-4
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- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- Ultra-fast genome comparison for large-scale genomic experiments
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- (2019) Christian P. Kubicek et al. BMC GENOMICS
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- (2019) Andrew Morgan et al. CHEMICO-BIOLOGICAL INTERACTIONS
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- Fungal L-asparaginase: Strategies for production and food applications
- (2019) Marília Crivelari da Cunha et al. FOOD RESEARCH INTERNATIONAL
- Fast and accurate long-read assembly with wtdbg2
- (2019) Jue Ruan et al. NATURE METHODS
- Exploring Trichoderma and Aspergillus secretomes: Proteomics approaches for the identification of enzymes of biotechnological interest
- (2018) Nicholas de Mojana di Cologna et al. ENZYME AND MICROBIAL TECHNOLOGY
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- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
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- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
- (2017) Robert M Waterhouse et al. MOLECULAR BIOLOGY AND EVOLUTION
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
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- (2017) Neil D Rawlings et al. NUCLEIC ACIDS RESEARCH
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Current applications and different approaches for microbial l-asparaginase production
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- Coming of age: ten years of next-generation sequencing technologies
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- Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences
- (2016) Elisabeth Veeckman et al. PLANT CELL
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
- (2015) Alison C Testa et al. BMC GENOMICS
- Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains
- (2015) Priscila Chaverri et al. MYCOLOGIA
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
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- (2014) Anthony M. Bolger et al. BIOINFORMATICS
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- (2014) P. Jones et al. BIOINFORMATICS
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- (2014) Bruce J. Walker et al. PLoS One
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
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- (2013) Richi V. Mahajan et al. FEMS MICROBIOLOGY LETTERS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
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- (2012) L. N. Ramya et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
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- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
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- (2008) Mihai Pop et al. TRENDS IN GENETICS
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