AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens

Deep Learning for Novel Antimicrobial Peptide Design

(2021) Christina Wang et al.   Biomolecules

Deep-AmPEP30: Improve Short Antimicrobial Peptides Prediction with Deep Learning

(2020) Jielu Yan et al.   Molecular Therapy-Nucleic Acids

Dimerization of antimicrobial peptides: a promising strategy to enhance antimicrobial peptide activity

(2019) E. N Lorenzón et al.   PROTEIN AND PEPTIDE LETTERS

Antimicrobial peptides from Rana [Lithobates] catesbeiana: Gene structure and bioinformatic identification of novel forms from tadpoles

(2019) Caren C. Helbing et al.   Scientific Reports

Recent Progress in Machine Learning-based Prediction of Peptide Activity for Drug Discovery

(2019) Qihui Wu et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Deep learning in bioinformatics: Introduction, application, and perspective in the big data era

(2019) Yu Li et al.   METHODS

Molecular mechanisms related to colistin resistance in Enterobacteriaceae

(2019) Zahra Aghapour et al.   Infection and Drug Resistance

Deep learning improves antimicrobial peptide recognition

(2018) Daniel Veltri et al.   BIOINFORMATICS

Recent Trends in Deep Learning Based Natural Language Processing [Review Article]

(2018) Tom Young et al.   IEEE Computational Intelligence Magazine

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

(2017) S. Austin Hammond et al.   Nature Communications

Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC

(2017) Prabina Kumar Meher et al.   Scientific Reports

Peptides with dual mode of action: Killing bacteria and preventing endotoxin-induced sepsis

(2016) Klaus Brandenburg et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Antimicrobial peptides

(2016) Ling-juan Zhang et al.   CURRENT BIOLOGY

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides: Table 1.

(2015) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

APD3: the antimicrobial peptide database as a tool for research and education

(2015) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

Cationic Peptides Facilitate Iron-induced Mutagenesis in Bacteria

(2015) Alexandro Rodríguez-Rojas et al.   PLoS Genetics

Antibiotic resistance sweeping developing world

(2014) Sara Reardon   NATURE

Antimicrobials, Stress and Mutagenesis

(2014) Alexandro Rodríguez-Rojas et al.   PLoS Pathogens

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

CAMP: Collection of sequences and structures of antimicrobial peptides

(2013) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

DADP: the database of anuran defense peptides

(2012) Mario Novković et al.   BIOINFORMATICS

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Kinetics of antimicrobial peptide activity measured on individual bacterial cells using high-speed atomic force microscopy

(2010) Georg E. Fantner et al.   Nature Nanotechnology

Serum Stabilities of Short Tryptophan- and Arginine-Rich Antimicrobial Peptide Analogs

(2010) Leonard T. Nguyen et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS