Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC

pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical–chemical properties

(2016) Zi Liu et al.   ANALYTICAL BIOCHEMISTRY

iPTM-mLys: identifying multiple lysine PTM sites and their different types

(2016) Wang-Ren Qiu et al.   BIOINFORMATICS

pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC

(2016) Jianhua Jia et al.   BIOINFORMATICS

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework

(2016) Bin Liu et al.   BIOINFORMATICS

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach

(2016) Jianhua Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudok-tuple nucleotide composition

(2015) Bin Liu et al.   BIOINFORMATICS

APD3: the antimicrobial peptide database as a tool for research and education

(2015) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

A statistical approach for 5′ splice site prediction using short sequence motifs and without encoding sequence data

(2014) Prabina Kumar Meher et al.   BMC BIOINFORMATICS

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins

(2013) Wei-Zhong Lin et al.   Molecular BioSystems

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

LAMP: A Database Linking Antimicrobial Peptides

(2013) Xiaowei Zhao et al.   PLoS One

ClassAMP: A Prediction Tool for Classification of Antimicrobial Peptides

(2012) Shaini Joseph et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

AVPpred: collection and prediction of highly effective antiviral peptides

(2012) Nishant Thakur et al.   NUCLEIC ACIDS RESEARCH

In silico identification of novel hevein-like peptide precursors

(2012) William F. Porto et al.   PEPTIDES

AMPA: an automated web server for prediction of protein antimicrobial regions

(2011) Marc Torrent et al.   BIOINFORMATICS

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

(2011) Ping Wang et al.   PLoS One

AntiBP2: improved version of antibacterial peptide prediction

(2010) Sneh Lata et al.   BMC BIOINFORMATICS

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

CAMP: a useful resource for research on antimicrobial peptides

(2009) Shaini Thomas et al.   NUCLEIC ACIDS RESEARCH