The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-09-26
DOI
10.1186/s12864-021-08004-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Histamine accumulation in dairy products: Microbial causes, techniques for the detection of histamine‐producing microbiota, and potential solutions
- (2021) Marta Moniente et al. COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
- (2021) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Histamine production in Lactobacillus vaginalis improves cell survival at low pH by counteracting the acidification of the cytosol
- (2020) Maria Diaz et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- A complete domain-to-species taxonomy for Bacteria and Archaea
- (2020) Donovan H. Parks et al. NATURE BIOTECHNOLOGY
- A unified catalog of 204,938 reference genomes from the human gut microbiome
- (2020) Alexandre Almeida et al. NATURE BIOTECHNOLOGY
- Characterization of a novel enzyme from Photobacterium phosphoreum with histidine decarboxylase activity
- (2020) K. Bjornsdottir-Butler et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Deciphering functional redundancy in the human microbiome
- (2020) Liang Tian et al. Nature Communications
- An Overview of Histamine and Other Biogenic Amines in Fish and Fish Products
- (2020) Pierina Visciano et al. Foods
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Comparison of normalization methods for the analysis of metagenomic gene abundance data
- (2018) Mariana Buongermino Pereira et al. BMC GENOMICS
- Role of Lactobacillus reuteri in Human Health and Diseases
- (2018) Qinghui Mu et al. Frontiers in Microbiology
- Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
- (2018) Melanie Schirmer et al. Nature Microbiology
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- Distinct roles of histamine H1- and H2-receptor signaling pathways in inflammation-associated colonic tumorigenesis
- (2018) Zhongcheng Shi et al. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- Clustal Omega for making accurate alignments of many protein sequences
- (2017) Fabian Sievers et al. PROTEIN SCIENCE
- A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
- (2017) Andrew Brantley Hall et al. Genome Medicine
- The Histidine Decarboxylase Gene Cluster of Lactobacillus parabuchneri Was Gained by Horizontal Gene Transfer and Is Mobile within the Species
- (2017) Daniel Wüthrich et al. Frontiers in Microbiology
- Phylogenetic rooting using minimal ancestor deviation
- (2017) Fernando Domingues Kümmel Tria et al. Nature Ecology & Evolution
- The Variable Regions ofLactobacillus rhamnosusGenomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
- (2016) Corina Ceapa et al. Genome Biology and Evolution
- Histamine-secreting microbes are increased in the gut of adult asthma patients
- (2016) Weronika Barcik et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Microbial Quality and Histamine Producing Microflora Analysis of the Ice Used for Fish Preservation
- (2016) Vangelis Economou et al. JOURNAL OF FOOD SAFETY
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- Detection of Gram-Negative Histamine-Producing Bacteria in Fish: A Comparative Study
- (2016) KRISTIN BJORNSDOTTIR et al. JOURNAL OF FOOD PROTECTION
- Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing
- (2016) Emily Vogtmann et al. PLoS One
- Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
- (2015) Jun Yu et al. GUT
- A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- (2015) Jiachao Zhang et al. ISME Journal
- The microbiome in asthma
- (2015) Yvonne J. Huang et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Gut biogeography of the bacterial microbiota
- (2015) Gregory P. Donaldson et al. NATURE REVIEWS MICROBIOLOGY
- Histamine H2 Receptor-Mediated Suppression of Intestinal Inflammation by Probiotic Lactobacillus reuteri
- (2015) Chunxu Gao et al. mBio
- Gut microbiome development along the colorectal adenoma–carcinoma sequence
- (2015) Qiang Feng et al. Nature Communications
- The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead
- (2014) Aleksandar D. Kostic et al. GASTROENTEROLOGY
- Histamine receptor 2 is a key influence in immune responses to intestinal histamine-secreting microbes
- (2014) Ruth Ferstl et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Potential of fecal microbiota for early-stage detection of colorectal cancer
- (2014) G. Zeller et al. Molecular Systems Biology
- Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
- (2014) H Bjørn Nielsen et al. NATURE BIOTECHNOLOGY
- The problem of biogenic amines in fermented foods and the use of potential biogenic amine-degrading microorganisms as a solution
- (2014) Miguel A. Alvarez et al. TRENDS IN FOOD SCIENCE & TECHNOLOGY
- Three-Component Lysine/Ornithine Decarboxylation System in Lactobacillus saerimneri 30a
- (2013) A. Romano et al. JOURNAL OF BACTERIOLOGY
- Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
- (2013) Jaina Mistry et al. NUCLEIC ACIDS RESEARCH
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- IBD—what role do Proteobacteria play?
- (2012) Indrani Mukhopadhya et al. Nature Reviews Gastroenterology & Hepatology
- Regulation of the immune response and inflammation by histamine and histamine receptors
- (2011) Liam O’Mahony et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- HdcB, a novel enzyme catalysing maturation of pyruvoyl-dependent histidine decarboxylase
- (2011) Hein Trip et al. MOLECULAR MICROBIOLOGY
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Molecular aspects of bacterial pH sensing and homeostasis
- (2011) Terry A. Krulwich et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- Sequencing and Transcriptional Analysis of the Streptococcus thermophilus Histamine Biosynthesis Gene Cluster: Factors That Affect Differential hdcA Expression
- (2010) M. Calles-Enriquez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce
- (2008) M SATOMI et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Outer and Inner Membrane Proteins Compose an Arginine-Agmatine Exchange System in Chlamydophila pneumoniae
- (2008) C. B. Smith et al. JOURNAL OF BACTERIOLOGY
- Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments
- (2008) Y. Oda et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histamine and its receptors
- (2006) Mike E Parsons et al. BRITISH JOURNAL OF PHARMACOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More