Chromatin enrichment for proteomics in plants (ChEP-P) implicates the histone reader ALFIN-LIKE 6 in jasmonate signalling

JASMONATE-ZIM DOMAIN proteins engage Polycomb chromatin modifiers to modulate Jasmonate signaling in Arabidopsis

(2021) Zicong Li et al.   Molecular Plant

The chromatin bound proteome of the human malaria parasite

(2020) Gayani Batugedara et al.   Microbial Genomics

Cell cycle–dependent localization of the proteasome to chromatin

(2020) Yuki Kito et al.   Scientific Reports

The roles of histone variants in fine-tuning chromatin organization and function

(2020) Sara Martire et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis

(2020) Yafei Wang et al.   Nature Communications

proteiNorm – A User-Friendly Tool for Normalization and Analysis of TMT and Label-Free Protein Quantification

(2020) Stefan Graw et al.   ACS Omega

A Mass Spectrometry Survey of Chromatin‐Associated Proteins in Pluripotency and Early Lineage Commitment

(2019) Guido Mierlo et al.   PROTEOMICS

Histone modifications form epigenetic regulatory networks to regulate abiotic stress response

(2019) Minoru Ueda et al.   PLANT PHYSIOLOGY

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

(2018) Benjamin Carter et al.   PLANT CELL

MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis

(2018) Shengjun Li et al.   PLANT CELL

The Deubiquitinase OTU5 Regulates Root Responses to Phosphate Starvation

(2018) Der-Fen Suen et al.   PLANT PHYSIOLOGY

Systematic Profiling of Histone Readers in Arabidopsis thaliana

(2018) Shuai Zhao et al.   Cell Reports

Family-Wide Characterization of Histone Binding Abilities of PHD Domains of AL Proteins in Arabidopsis thaliana

(2018) Xiao Liang et al.   PROTEIN JOURNAL

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Jasmonate action in plant growth and development

(2017) Huang Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the  Arabidopsis Proteome during Photomorphogenesis

(2017) Victor Aguilar-Hernández et al.   Molecular Plant

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Jasmonate inhibits COP1 activity to suppress hypocotyl elongation and promote cotyledon opening in etiolated Arabidopsis seedlings

(2017) Yuyu Zheng et al.   PLANT JOURNAL

The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes

(2016) Anne M. Molitor et al.   PLANT CELL

In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings

(2016) Marlene Reichel et al.   PLANT CELL

Phosphate Deficiency Induces the Jasmonate Pathway and Enhances Resistance to Insect Herbivory

(2016) Ghazanfar Abbas Khan et al.   PLANT PHYSIOLOGY

Multiclassifier combinatorial proteomics of organelle shadows at the example of mitochondria in chromatin data

(2016) Georg Kustatscher et al.   PROTEOMICS

The paralogous R3 MYB proteins CAPRICE, TRIPTYCHON and ENHANCER OF TRY AND CPC1 play pleiotropic and partly non-redundant roles in the phosphate starvation response ofArabidopsisroots

(2015) Chun-Ying Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromatin enrichment for proteomics

(2014) Georg Kustatscher et al.   Nature Protocols

The hnRNP-Q Protein LIF2 Participates in the Plant Immune Response

(2014) Clémentine Le Roux et al.   PLoS One

Arabidopsis AL PHD-PRC1 Complexes Promote Seed Germination through H3K4me3-to-H3K27me3 Chromatin State Switch in Repression of Seed Developmental Genes

(2014) Anne Marie Molitor et al.   PLoS Genetics

PRL1, an RNA-Binding Protein, Positively Regulates the Accumulation of miRNAs and siRNAs in Arabidopsis

(2014) Shuxin Zhang et al.   PLoS Genetics

A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis

(2013) Xueying Wu et al.   CELL RESEARCH

Proteomics identifies ubiquitin–proteasome targets and new roles for chromatin-remodeling in the Arabidopsis response to phosphate starvation

(2013) Joaquín Iglesias et al.   Journal of Proteomics

ALFIN-LIKE 6 is involved in root hair elongation during phosphate deficiency in Arabidopsis

(2013) Nulu Naga Prafulla Chandrika et al.   NEW PHYTOLOGIST

CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts

(2013) S. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Normalization and missing value imputation for label-free LC-MS analysis

(2012) Yuliya V Karpievitch et al.   BMC BIOINFORMATICS

The Cyclophilin AtCYP71 Interacts with CAF-1 and LHP1 and Functions in Multiple Chromatin Remodeling Processes

(2011) Hong Li et al.   Molecular Plant

HISTONE DEACETYLASE6 Interacts with FLOWERING LOCUS D and Regulates Flowering in Arabidopsis

(2011) C.-W. Yu et al.   PLANT PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

NINJA connects the co-repressor TOPLESS to jasmonate signalling

(2010) Laurens Pauwels et al.   NATURE

Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers

(2009) Woo Yong Lee et al.   PLANT JOURNAL

Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator

(2009) A. P. Smith et al.   PLANT PHYSIOLOGY

Two Prp19-Like U-Box Proteins in the MOS4-Associated Complex Play Redundant Roles in Plant Innate Immunity

(2009) Jacqueline Monaghan et al.   PLoS Pathogens

HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis

(2008) K. Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine

(2008) L. Katsir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA