Long-term combined application of chemical fertilizers and organic manure shapes the gut microbial diversity and functional community structures of earthworms

Deciphering Potential Roles of Earthworms in Mitigation of Antibiotic Resistance in the Soils from Diverse Ecosystems

(2021) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Trophic level drives the host microbiome of soil invertebrates at a continental scale

(2021) Dong Zhu et al.   Microbiome

The bacterial community structures in response to the gut passage of earthworm (Eisenia fetida) feeding on cow dung and domestic sludge: Illumina high-throughput sequencing-based data analysis

(2020) Jian Hu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of Earthworms on the Microbiomes and Antibiotic Resistomes of Detritus Fauna and Phyllospheres

(2020) Dong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The driving factors of nematode gut microbiota under long-term fertilization

(2020) Fei Zheng et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term application of organic fertilization causes the accumulation of antibiotic resistome in earthworm gut microbiota

(2019) Jing Ding et al.   ENVIRONMENT INTERNATIONAL

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen fertilization alters the effects of earthworms on soil physicochemical properties and bacterial community structure

(2019) Shumei Cai et al.   APPLIED SOIL ECOLOGY

Exposure of soil collembolans to microplastics perturbs their gut microbiota and alters their isotopic composition

(2018) Dong Zhu et al.   SOIL BIOLOGY & BIOCHEMISTRY

A comparative study of gut microbiota profiles of earthworms fed in three different substrates

(2017) Dianfeng Liu et al.   SYMBIOSIS

Characterization of the bacterial communities of casts from Eisenia andrei fed with different substrates

(2016) Manuel Aira et al.   APPLIED SOIL ECOLOGY

Microbial communities of an arable soil treated for 8 years with organic and inorganic fertilizers

(2016) Chen Chen et al.   BIOLOGY AND FERTILITY OF SOILS

Excellent N-fixing and P-solubilizing traits in earthworm gut-isolated bacteria: A vermicompost based assessment with vegetable market waste and rice straw feed mixtures

(2016) Nazneen Hussain et al.   BIORESOURCE TECHNOLOGY

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

(2016) Ning Ling et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic and functional characterization of an extracellular modular GH6 endo-β-1,4-glucanase from an earthworm symbiont, Cellulosimicrobium funkei HY-13

(2015) Do Young Kim et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Changes in earthworm gut associated enzymes and microbial diversity on the treatment of fermented tannery waste using epigeic earthworm Eudrilus eugeniae

(2015) B. Ravindran et al.   ECOLOGICAL ENGINEERING

Taxonomic and functional annotation of gut bacterial communities of Eisenia foetida and Perionyx excavatus

(2015) Arjun Singh et al.   MICROBIOLOGICAL RESEARCH

Diversity and abundance of soil fauna as influenced by long-term fertilization in cropland of purple soil, China

(2015) Xinyu Zhu et al.   SOIL & TILLAGE RESEARCH

Soil biodiversity and DNA barcodes: opportunities and challenges

(2015) Alberto Orgiazzi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

The effect of anthropogenic arsenic contamination on the earthworm microbiome

(2014) Daniel Antony Pass et al.   ENVIRONMENTAL MICROBIOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Soil microbial diversity affects soil organic matter decomposition in a silty grassland soil

(2012) Karen Baumann et al.   BIOGEOCHEMISTRY

Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

(2011) Laetitia Bernard et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Agronomic phosphorus imbalances across the world's croplands

(2011) G. K. MacDonald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content

(2010) Pia K Wüst et al.   ISME Journal

A high-resolution assessment on global nitrogen flows in cropland

(2010) Junguo Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Situ Hydrogen and Nitrous Oxide as Indicators of Concomitant Fermentation and Denitrification in the Alimentary Canal of the Earthworm Lumbricus terrestris

(2009) P. K. Wust et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Gut wall bacteria of earthworms: a natural selection process

(2009) Dwipendra Thakuria et al.   ISME Journal

Diet-related composition of the gut microbiota of Lumbricus rubellus as revealed by a molecular fingerprinting technique and cloning

(2009) B.A. Knapp et al.   SOIL BIOLOGY & BIOCHEMISTRY

Actinobacteria as mutualists: general healthcare for insects?

(2009) Martin Kaltenpoth   TRENDS IN MICROBIOLOGY

Phylogenetic diversity of Acidobacteria in a former agricultural soil

(2008) Anna Kielak et al.   ISME Journal

Earthworm population dynamics as influenced by the quality of exogenous organic matter

(2008) Ben L.M. Leroy et al.   PEDOBIOLOGIA