Diverse crop rotations influence the bacterial and fungal communities in root, rhizosphere and soil and impact soil microbial processes

Crop rotation enhances soybean yields and soil health indicators

(2021) Ikechukwu V. Agomoh et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Altered soil organic matter composition and degradation after a decade of nitrogen fertilization in a temperate agroecosystem

(2021) Meiling Man et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition

(2021) Laura Stefan et al.   Frontiers in Microbiology

Litter composition has stronger influence on the structure of soil fungal than bacterial communities

(2020) Jemaneh Z. Habtewold et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Soil Biodiversity Integrates Solutions for a Sustainable Future

(2020) Elizabeth M. Bach et al.   Sustainability

Rhizosphere control of soil nitrogen cycling: a key component of plant economic strategies

(2020) Ludovic Henneron et al.   NEW PHYTOLOGIST

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Interactions between plants and soil shaping the root microbiome under abiotic stress

(2019) Kyle Hartman et al.   BIOCHEMICAL JOURNAL

Bacterial microbiome associated with the rhizosphere and root interior of crops in Saskatchewan, Canada

(2019) Jorge Cordero et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Intensifying crop rotations with pulse crops enhances system productivity and soil organic carbon in semi-arid environments

(2019) Kui Liu et al.   FIELD CROPS RESEARCH

Decomposition of mixtures of cover crop residues increases microbial functional diversity

(2019) Sytske M. Drost et al.   GEODERMA

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

(2019) Jennifer E. Schmidt et al.   Microbiome

Long-term Trends in Corn Yields and Soil Carbon under Diversified Crop Rotations

(2018) Marek Jarecki et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Repeated application of organic waste affects soil organic matter composition: Evidence from thermal analysis, FTIR-PAS, amino sugars and lignin biomarkers

(2017) Clément Peltre et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial Root Microbiome of Plants Growing in Oil Sands Reclamation Covers

(2017) Eduardo K. Mitter et al.   Frontiers in Microbiology

Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use

(2017) Melissa M. Arcand et al.   Frontiers in Microbiology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

(2017) Nico Eisenhauer et al.   Scientific Reports

Previous crop and rotation history effects on maize seedling health and associated rhizosphere microbiome

(2017) Maria-Soledad Benitez et al.   Scientific Reports

Microbial crop residue decomposition dynamics in organic and conventionally managed soils

(2016) Melissa M. Arcand et al.   APPLIED SOIL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The impact of crop rotation on soil microbial diversity: A meta-analysis

(2016) Zander Samuel Venter et al.   PEDOBIOLOGIA

Wheat improves nitrogen use efficiency of maize and soybean-based cropping systems

(2015) Amélie C.M. Gaudin et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Lignin biochemistry and soil N determine crop residue decomposition and soil priming

(2015) Catherine E. Stewart et al.   BIOGEOCHEMISTRY

Phosphate solubilization and promotion of maize growth by Penicillium oxalicum P4 and Aspergillus niger P85 in a calcareous soil

(2015) Zhongwei Yin et al.   CANADIAN JOURNAL OF MICROBIOLOGY

A modified incubation method reduces analytical variation of soil hydrolase assays

(2015) Sarah K. Hargreaves et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

Diversifying crop rotations with pulses enhances system productivity

(2015) Yantai Gan et al.   Scientific Reports

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

Beyond carbon sequestration: soil as conduit of solar energy

(2014) H. H. Janzen   EUROPEAN JOURNAL OF SOIL SCIENCE

Crop rotation complexity regulates the decomposition of high and low quality residues

(2014) M.D. McDaniel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Crop Rotation, Red Clover and Cropping History Influences Microbial Amino Sugars of a Clay Loam Soil

(2014) Bin Zhang et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes

(2013) H. Mori et al.   DNA RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Effects of long-term and recently imposed tillage on the concentration and composition of amino sugars in a clay loam soil in Ontario, Canada

(2013) Bin Zhang et al.   SOIL & TILLAGE RESEARCH

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Long-term rotation and tillage effects on soil structure and crop yield

(2012) Lars J. Munkholm et al.   SOIL & TILLAGE RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations

(2011) Amanda J. Bennett et al.   BIOLOGICAL REVIEWS

Optimisation of amino sugar quantification by HPLC in soil and plant hydrolysates

(2011) Caroline Indorf et al.   BIOLOGY AND FERTILITY OF SOILS

Nitrous oxide and carbon dioxide emissions from monoculture and rotational cropping of corn, soybean and winter wheat

(2011) C F Drury et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Isolation of Cellulolytic Fungi from Waste of Castor (Ricinus communis L.)

(2011) Polyanna N. Herculano et al.   CURRENT MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Protein enrichment, cellulase production and in vitro digestion improvement of pangolagrass with solid state fermentation

(2011) Chan-Chin Hu et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

(2011) Yun-juan Chang et al.   Standards in Genomic Sciences

Fate of lignins in soils: A review

(2010) Mathieu Thevenot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbial community, C, N, and P responses to long-term tillage and crop rotation

(2009) Ma. del Carmen A. González-Chávez et al.   SOIL & TILLAGE RESEARCH