Data-independent acquisition (DIA): An emerging proteomics technology for analysis of drug-metabolizing enzymes and transporters

Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS)-Based Proteomics of Drug-Metabolizing Enzymes and Transporters

(2020) Jiapeng Li et al.   MOLECULES

Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications

(2020) Lindsay K. Pino et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Characterization of Differential Tissue Abundance of Major Non-CYP Enzymes in Human

(2020) Abdul Basit et al.   MOLECULAR PHARMACEUTICS

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

(2020) Florian Meier et al.   NATURE METHODS

Label-free absolute protein quantification with data-independent acquisition

(2019) Bing He et al.   Journal of Proteomics

Comparative Proteomics Analysis of Human Liver Microsomes and S9 Fractions

(2019) Xinwen Wang et al.   DRUG METABOLISM AND DISPOSITION

Comparison of Proteomic Quantification Approaches for Hepatic Drug Transporters: Multiplexed Global Quantitation Correlates with Targeted Proteomic Quantitation

(2018) Anna Vildhede et al.   DRUG METABOLISM AND DISPOSITION

Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes

(2018) Jian Shi et al.   Drug Metabolism and Pharmacokinetics

Trapped ion mobility spectrometry: A short review

(2018) Mark E. Ridgeway et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

(2018) Christina Ludwig et al.   Molecular Systems Biology

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer

(2018) Florian Meier et al.   MOLECULAR & CELLULAR PROTEOMICS

On the contribution of mass spectrometry-based platforms to the field of personalized oncology

(2018) Eleonora Orlando et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Development of a rapid and sensitive multiple reaction monitoring proteomic approach for quantification of transporters in human liver tissue

(2017) Li Wang et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Multiplex and Label-Free Relative Quantification Approach for Studying Protein Abundance of Drug Metabolizing Enzymes in Human Liver Microsomes Using SWATH-MS

(2017) Rohitash Jamwal et al.   JOURNAL OF PROTEOME RESEARCH

Variability in Mass Spectrometry-based Quantification of Clinically Relevant Drug Transporters and Drug Metabolizing Enzymes

(2017) Christine Wegler et al.   MOLECULAR PHARMACEUTICS

Enhanced differential expression statistics for data-independent acquisition proteomics

(2017) Tomi Suomi et al.   Scientific Reports

Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

(2016) Ludovic C. Gillet et al.   Annual Review of Analytical Chemistry

Effect of Intestinal Flora on Protein Expression of Drug-Metabolizing Enzymes and Transporters in the Liver and Kidney of Germ-Free and Antibiotics-Treated Mice

(2016) Takuya Kuno et al.   MOLECULAR PHARMACEUTICS

Advances in targeted proteomics and applications to biomedical research

(2016) Tujin Shi et al.   PROTEOMICS

Large-scale multiplex absolute protein quantification of drug-metabolizing enzymes and transporters in human intestine, liver, and kidney microsomes by SWATH-MS: Comparison with MRM/SRM and HR-MRM/PRM

(2016) Kenji Nakamura et al.   PROTEOMICS

Parallel reaction monitoring using quadrupole-Orbitrap mass spectrometer: Principle and applications

(2016) Adele Bourmaud et al.   PROTEOMICS

Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows

(2015) Birgit Schilling et al.   ANALYTICAL CHEMISTRY

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

(2015) Chih-Chiang Tsou et al.   NATURE METHODS

SWATH enables precise label-free quantification on proteome scale

(2015) Qiang Huang et al.   PROTEOMICS

Absolute protein quantification of clinically relevant cytochrome P450 enzymes and UDP-glucuronosyltransferases by mass spectrometry-based targeted proteomics

(2014) C. Gröer et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics

(2012) Tujin Shi et al.   PROTEOMICS

Protein quantification of UDP-glucuronosyltransferases 1A1 and 2B7 in human liver microsomes by LC-MS/MS and correlation with glucuronidation activities

(2012) Yuichiro Sato et al.   XENOBIOTICA

Quantification of Human Uridine-Diphosphate Glucuronosyl Transferase 1A Isoforms in Liver, Intestine, and Kidney Using Nanobore Liquid Chromatography–Tandem Mass Spectrometry

(2011) David E. Harbourt et al.   ANALYTICAL CHEMISTRY

Less label, more free: Approaches in label-free quantitative mass spectrometry

(2011) Karlie A. Neilson et al.   PROTEOMICS

Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level

(2008) Stefan Hanke et al.   JOURNAL OF PROTEOME RESEARCH